Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00328 ATGACCCTTTTGCCCTTCACTCCCTCCCTCTCCGCAGCAATGGACGCCGCCGCCGCCGCCGCCGAACCTCTCCCGAGCTCGGAGCTCCAACTGCCTATGTCATCCCAGGATCCGAATCGACCCGGGTCGGGTCAGAATGCGACAGCGAGGTACAAGCTAATGTCACCGGCGAAGCTTCCGATCTCGAGGTCGCCGTGCCTCACGATTCCTCCGGGTCTTAGTCCGACTTCGTTTCTGGAATCACCTGTTCTTCTTTCCAACATGAAGGTGAGTGTGTACTGTTACTGTGTGACTGAGCTCTTTTGCTTCTTCTTTGGGGTTTTTCTGTTTTCTGGGGAAAGTAAATGCTTGGGTGAATTCATTCGGGCAATGCTGTTCTTGTTGTTGAGCTCATTTTGGTTAAAGGTGGAGGCTTCACCTACTACAGGGTCCCTCCGTAAGCTTCAACAAACAGTACATGGTTTCATGGCTTCTGCTGCCTCTGCTACATTTCCAGTAACGACTACCAGTTTCAATACCAATACTGTTGAAGACAGACAATCAAGCTTCTTTGAGTTTAAACCTCTTAATAGATCGAATATGGTTCCTGCAGACTTCAACAACCATCTAAGTAAACAATCTACTCAAGTAGAAGCTCCAACAAAATCTCAATCATTTGCTTCCTCACCATTATCTGAAAGTGAGATAGCAGTTCCTTCTAATGAATTAAGCCTATCATCACCTGTACAAATGGTTAGTTCTAGTGCTAGTGCTCTTGTTGATGTTAATTTGGATGACATTAACCACAAAGGCAACACAGCTACTGTACACCAAGCATCGCATGTTGAGGTTAGAGGCAGTGGATTTTCAGTTGCAACTGAGAAAACATCTGATGATGGATACAATTGGCGAAAATATGGACAAAAGCTTGTTAAAGGAAGTGAATTTCCTCGCAGTTATTACAAATGTACACATCCTAACTGTGAAGTGAAAAAATTGTTTGAACGTTCTCATGATGGTCAAATCACTGAGATAATTTACAAGGGAACACATGATCATCCTAAACCTCAACCAAGCTGCCGATACTCTACTGGCACTGTTGTGTCTATTCAAGGGGAGAGATCTGATAAGGCTTCTTTGACCGGTCGAGATGAGAAAGCATCTGCTGTGTATGGTCAGGTGTCTCATGTTGCTGAGCCCAACAGTACTCCAGAGCGATCACCTGTAGCAACAAATGATGATGGTTTAGATGGTTCCGGGTTTGTGTCGAGCAGGACTAATGAAGAGGTTGATGATGATGATCTCGTGTCAAAGCGAAGAAAGATGGAACTTGGAAATGCTGACAATAATCCTTTAGTTAAGCCTATCCGGGAACCACGGGTTGTTGTACAAACTTTGAGTGAAGTTGATATATTGGATGATGGGTACCGATGGCGTAAGTATGGCCAGAAGGTGGTTAGAGGCAATCCTAACCCAAGGAGTTATTACAAGTGCACAAATGCAGGTTGCCCTGTCAGAAAACATGTGGAGAGGGCATCTCATGATCCGAAAGCAGTGATAACCACATATGAGGGTAAACACAATCATGATGTACCAGCTGCTAGGAATAGCAGCCATGACATGGCAGTACCAGCAGGTGGACAGACTAGAATTAAGTTAGAAGAAAGTGATACCATTAGCCTTGACCTTGGGATGGGCATTAGCTCGGCTGCTGAACATAGATCAAACGGGCAAGAGAAAGTGCTGCACTCAGAATTTGGAGACACACAAACTCACACTACCAATTCCAATTTCAAGTTTGTTCATACTACCTCAGCTCCAGTATACTTTGGTGTTCTAAGTAAAAGCTCAAATCCCTATGGTTCTGGAGACAATAGGAGTGATGGTCCATCTTTAAACCATTCCCCCTATCCATGCCCACAGACCATGGGAAAAATACTAATGGGTCCATGAAATTGATTACAACACAAATATTAAAATAAAAATTATGAGTAATATTTTGCTTTTTTTTTTCCTTTTTTCTTTTGGAGGGTATAGCTTCAAAGATGCAACATCTCATTTTCTTACAGAAAATGCAGATAGTTCTTTTATGTTTATATAACTATTTGAGAGCTGCTGATATGTAGAATTTGTAGCAGTTCCATGTTGACTTTTAAATCTAATTGCCGC 2148 0.4297 MTLLPFTPSLSAAMDAAAAAAEPLPSSELQLPMSSQDPNRPGSGQNATARYKLMSPAKLPISRSPCLTIPPGLSPTSFLESPVLLSNMKVSVYCYCVTELFCFFFGVFLFSGESKCLGEFIRAMLFLLLSSFWLKVEASPTTGSLRKLQQTVHGFMASAASATFPVTTTSFNTNTVEDRQSSFFEFKPLNRSNMVPADFNNHLSKQSTQVEAPTKSQSFASSPLSESEIAVPSNELSLSSPVQMVSSSASALVDVNLDDINHKGNTATVHQASHVEVRGSGFSVATEKTSDDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPSCRYSTGTVVSIQGERSDKASLTGRDEKASAVYGQVSHVAEPNSTPERSPVATNDDGLDGSGFVSSRTNEEVDDDDLVSKRRKMELGNADNNPLVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPAARNSSHDMAVPAGGQTRIKLEESDTISLDLGMGISSAAEHRSNGQEKVLHSEFGDTQTHTTNSNFKFVHTTSAPVYFGVLSKSSNPYGSGDNRSDGPSLNHSPYPCPQTMGKILMGP 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00328 643 SUPERFAMILY WRKY DNA-binding domain 286 349 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pste8g00328 643 SUPERFAMILY WRKY DNA-binding domain 457 525 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pste8g00328 643 ProSiteProfiles WRKY domain profile. 285 349 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pste8g00328 643 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 184 561 IPR044810 GO:0003700
Pste8g00328 643 MobiDBLite consensus disorder prediction 613 643 - -
Pste8g00328 643 MobiDBLite consensus disorder prediction 613 631 - -
Pste8g00328 643 FunFam WRKY transcription factor 280 350 - -
Pste8g00328 643 FunFam WRKY transcription factor 33 452 518 - -
Pste8g00328 643 Gene3D WRKY domain 450 526 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pste8g00328 643 Gene3D WRKY domain 281 350 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pste8g00328 643 ProSiteProfiles WRKY domain profile. 460 525 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pste8g00328 643 SMART WRKY_cls 290 348 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pste8g00328 643 SMART WRKY_cls 465 524 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pste8g00328 643 MobiDBLite consensus disorder prediction 390 426 - -
Pste8g00328 643 Pfam WRKY DNA -binding domain 466 522 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pste8g00328 643 Pfam WRKY DNA -binding domain 291 347 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00328 Pste-Chr8 1771648 1777068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00328 54 643 WRKY Transcription Factor Family AT4G26640 50.662 1.61e-166 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pste8g00328 WRKY 1.6e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g00328 8 1771648 1777068 Pste8g00328 8 1771648 1777068 ECH
Pste7g01395 7 12709340 12715958 Pste8g00328 8 1771648 1777068 PCT