LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste8g00323	TTACGTGACCAGGATGGGGATTTGGTTGAAGAGTTGCGTCGTTTGAGTTGCGAGAACAAGAGGTTGAACCGGATGTTGACCCACTTGTGTGAGAGTTACATGGTTCTGCAGAAGCAATTGAGCCAATTCATCAACACTAATAATAATTCTGATCACCACCACCAAGACCCACTTGATCAATCACGCAAGAGAAAAGTATCTGATAGTGATAAATATAATGCTGAGTGCAGCTCCATCACTGAGGATTCGTTAAAAAAGCACAAGGATTTCAACTTCTCCCCCAAGGTTTCCAAGGTTCTTGTCAAGACTGAAGCATCTAATAATAGTTTGTATGTCATGGATGGATATCAATGGAGGAAATATGGTCAGAAGGTCACAAGAGATAACCCTTCTCCCAGAGCTTACTTCAGGTGCTCCTTTGCCCCAAGCTGCCCAGTGCAAAGGAGTTTAGAGGACCCTACAATACTTGTTACAACTTATGAAGGAGAGCATAACCATGGTCATCAAAGAGGAGAAATATCATTTATATCAAGCCAAAGTCAAACTCCAAAAGGGTCAAGTCCTGTTTCCTCACCTACTACACCCACAATTAGAAGTGCTTGCCCCACCGTAACGCTTGATTTGGTCAACTCAGAATTGGTAGAAGAAAGTGCCCAAAAGTCTTCCATTCAGCAATTTTTGGTTCAACAAATGGCTACTTCTTTGACAAGGGACCCTAATTTCACCATAGCACTTGCCTCTGCCATTTCAGGAAAAATTCTAGACGCCAAGTGGTGA	777	0.426	LRDQDGDLVEELRRLSCENKRLNRMLTHLCESYMVLQKQLSQFINTNNNSDHHHQDPLDQSRKRKVSDSDKYNAECSSITEDSLKKHKDFNFSPKVSKVLVKTEASNNSLYVMDGYQWRKYGQKVTRDNPSPRAYFRCSFAPSCPVQRSLEDPTILVTTYEGEHNHGHQRGEISFISSQSQTPKGSSPVSSPTTPTIRSACPTVTLDLVNSELVEESAQKSSIQQFLVQQMATSLTRDPNFTIALASAISGKILDAKW	258

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste8g00323	258	Gene3D	WRKY domain	95	168	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pste8g00323	258	MobiDBLite	consensus disorder prediction	52	70	-	-
	Pste8g00323	258	MobiDBLite	consensus disorder prediction	46	70	-	-
	Pste8g00323	258	SUPERFAMILY	WRKY DNA-binding domain	110	168	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pste8g00323	258	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	8	253	IPR044810	GO:0003700
	Pste8g00323	258	SMART	WRKY_cls	112	168	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste8g00323	258	MobiDBLite	consensus disorder prediction	177	196	-	-
	Pste8g00323	258	Pfam	WRKY DNA -binding domain	114	166	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste8g00323	258	ProSiteProfiles	WRKY domain profile.	107	169	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste8g00323	Pste-Chr8	1752077	1753452	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste8g00323	8	253	WRKY Transcription Factor Family	AT1G80840	45.113	1.36e-65	204

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Pste8g00323		WRKY	1.3e-18	CL0274