Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00299 GTGCAAGGTGATGATACTGATAGTGATCATGCTAGAAACATCATTACTTGGGAGGACTTCATGGTGGATGAACAAGGTATAACATCCAATTTTGGTGGTCATCTTATTGTGGTTGATCAAACTGGTAATGGAGACTCAACAACTGTTCAAGGGGCTGTAGATATGGTTCCCCTAAACAACACACAAAGGGTCAAGATATACATTTATCCCGGAATTTATAGGGAAAGAGTGCATGTGCCGAAAAGCAAGGCGTTTGTTTCATTTATAGGTAAAGTTAGAAAAATGAATGAGAATGGGAATGGGACACCAATTATCACAAATAGTACAAAGGCTTCGGACAAAGGCTCCAATGGCCAACAACTTGGCACTGTTAGTACATCTACTCTATGGATAGAATCCGATTTCTTCTGCGCAACTGCTCTTACAATTCAGAATTTAGTAGATAAAGATGCAGATAAGCGTCAAGCAGTGGCATTGCGTGTAGACGGTGATAAAGCTGTATTCTACCAAGTTAGGCTTGTGGGGGAGCAGGACACCCTCCTAGATAGCACTGGAATCCATTATTACTATCGAAGTTACATTCAAGGATCCGTTGATTTTATATTCGGCAACGCAAAATCATTGTTCCATCAGGAATGTGTAGTGCACTCTGTGGCTGAGTTTTGGGGAGCAATTGCAGCCCATCACAGGGATTCGGATGATGAAGATACTGGATTTTCATTCGTTAATTGCACAATCAAAGGAAGTGGTAGTATATTTCTTGGGAGAGCTTGGGGCCACTATGCAACAACCATATATTCATACTGTCACATGGATGATATCATTAATCCCTTGGGATGGAGCGATTGGGATGATCCATCTAGACAAGAGACTGCCATATTTGGAGAGTATCAGTGTTGGGGGAAGGGATCAAACACAAGTGCCAGAGTCCAATGGTCCAAAGCTCTTAGCATGAGCGTGCCTGCGACCAAGCCTTATGTATCATTTATAGGAAAAAGAAATCAAACAGCAAGTCCTGTTATTACTTGGAACAGTAAGTCATCTGACAAAGGTCCAAATGGGCAAGCATTAGGCACATATGATTCAGCGACAGTGGGAGTGGACTCAGATTATTTTTGTGCAACTGGGGTCACTTTTGAGAACTCAGTGATTGCATCTGCCGGTGGAAAAGGGATGCAAGGAGTGGCATTGAGAGTGAACAGTGCAAGAGCCATGTTCTATAAAGTGAGAATTAAGGGGACACAGGACTCTCTGTTGGACAACACAGGAAATCATTACTTCTTAAAGTGTCGCATTCTAGGAAAAGTTGATTTTATCTGTGGCAGTGCAAAATCACTGTATGAGAAATGTCGACTTCAGTCAATTGCGGAGAACTATGGAGCAATAGCAGCACATCATCGGAATTCACCAGAAGAAGACACGGGTTGCAGTATAAGAGGAAGTGGTAGTGTGTACCTTGGCAGAGCATGGGGGAACTACTCAAGAATTATATACTCAAAATGTAATATGGATGGCATTATTATACCTGAAGGGTGGTCAGATTGGAATCGTCCAGATAGAAAGAAGTATGTGTTTGGTGAGTATGACTGCAAGGGAAGAGGAGCAGATAGAAGATACAGGGTGCCTTGGTCTAAATCATTCAGCTATCAGCAAGCAAGGCCTTACCTTTACAAGAGCTTCATAGATGGAGACCAGTGGCTAAGA 1704 0.4243 VQGDDTDSDHARNIITWEDFMVDEQGITSNFGGHLIVVDQTGNGDSTTVQGAVDMVPLNNTQRVKIYIYPGIYRERVHVPKSKAFVSFIGKVRKMNENGNGTPIITNSTKASDKGSNGQQLGTVSTSTLWIESDFFCATALTIQNLVDKDADKRQAVALRVDGDKAVFYQVRLVGEQDTLLDSTGIHYYYRSYIQGSVDFIFGNAKSLFHQECVVHSVAEFWGAIAAHHRDSDDEDTGFSFVNCTIKGSGSIFLGRAWGHYATTIYSYCHMDDIINPLGWSDWDDPSRQETAIFGEYQCWGKGSNTSARVQWSKALSMSVPATKPYVSFIGKRNQTASPVITWNSKSSDKGPNGQALGTYDSATVGVDSDYFCATGVTFENSVIASAGGKGMQGVALRVNSARAMFYKVRIKGTQDSLLDNTGNHYFLKCRILGKVDFICGSAKSLYEKCRLQSIAENYGAIAAHHRNSPEEDTGCSIRGSGSVYLGRAWGNYSRIIYSKCNMDGIIIPEGWSDWNRPDRKKYVFGEYDCKGRGADRRYRVPWSKSFSYQQARPYLYKSFIDGDQWLR 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00299 568 Gene3D - 318 568 IPR012334 -
Pste8g00299 568 Gene3D - 34 317 IPR012334 -
Pste8g00299 568 FunFam Pectinesterase 319 568 - -
Pste8g00299 568 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 34 317 - -
Pste8g00299 568 Pfam Pectinesterase 36 315 IPR000070 GO:0030599|GO:0042545
Pste8g00299 568 Pfam Pectinesterase 319 564 IPR000070 GO:0030599|GO:0042545
Pste8g00299 568 SUPERFAMILY Pectin lyase-like 319 567 IPR011050 -
Pste8g00299 568 ProSitePatterns Pectinesterase signature 2. 194 203 IPR033131 -
Pste8g00299 568 FunFam Pectinesterase 32 318 - -
Pste8g00299 568 SUPERFAMILY Pectin lyase-like 35 314 IPR011050 -
Pste8g00299 568 MobiDBLite consensus disorder prediction 100 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00299 Pste-Chr8 1632136 1643375 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00299 320 522 Carbohydrate Esterase AT5G55590 55.288 4.56e-80 253
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g00299 8 1632136 1643375 Pste8g00299 8 1632136 1643375 ECH