LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste8g00290	CAACTTCAACTTCAACTTCAACTTCAACGCGGTATTTGATTCATGATTTATGGATAAAGTAGATGAAATGGGATCCACTAATCAGATGCTCTGGAAGCCTTTGCCATATCATACTCCTCTCTCCCTCTCTCGTAGCTACTTCAAAGTTACTATTGCTTGGAACTGTTTTGGCTTGGAGGATTCCCCATTACTAGAAGATGTCCTCTATAACCAATCCTTATTGTCTAAATTCTCTGGCATGGCCAACAATGGTGTAAAGGATCCCTTGCTGTCAGGGTCACTGGAAGTGACTCAAAAGGCTAACCGGCAGTTAAACAAGAGAAGGTTCCTCCGTTCTAGAAGTGCTCCCCACACAAATCTTGTTTCTACTGTGACAAATGGCAATGAATCAATTCCCCATACTGCATCCATATTTCAGAATTTACATCCAAGCTTTAAAAGAGTGGCTATCTACCTTGCAGTCTATTTAGGTATAGGTGCTTTAATCTTCTACCTTGTCAGGAACCAGATTAAGGGGCTTAAAACAGATGGAATTCTTGATGCTATATACTTTACAATTGTAACAATGACCACTGTCGGATATGGAGACCTAGTGCCCAATAGCCACCTTACAAAACTTCTTGCATGTGCTTTTGTTTTCTCTGGGATGGCATTGATTGGATTAATTGTAAGCAAGGCAGCTGACTACCTTGTTGAGAAACAGGAATTTTTGCTAGTCAAAGCTATGCGCATGTACCAAAAGGTTGGTTCAACTGAAATTTTAAAGGAGATTGAGACCAATAAAACAAGAAACAAATTATTTCTAGTTTTTTTCCTTCTTTTGATTCTCATCATTGCTGGGATAATTTTTTTGGTCACTGTTGAGAAATTGGATATTATTGATGCATTATACTGTGTTTGTTCTACAATTACAACCCTGGGTTATGGGGATAAAAGTTTCTCTACTCAAGCAGGCAGAATATTTGCTGTGTTTTGGATATTGACCGGTACTATTACTTTAGCTCAGCTTTTCCTCTACATTGCTGAGCTAAACACTGAAATCAAACAAAAGGAACTTGTCAAGTGGGTACTTACAAGGAAAGTGACAAATGTAGATTTGGAGGCTGCAGATATAGATGACGACGGAACTGTTGGGGCCGCTGAGTTTGTTATTTACAAGCTGAAAGAGATGGGGAAGATTAATCAAGAAGATATATCACTTGTAATGCAGGAGTTTGAACAGCTAGATGTTGATGATTCTGGTACATTGTCAACTTCGGATATAACACTTGCTCAGTCATCTTAGATTAACACATTATATGCACCCAGTTGGTACAGAATGTTGCATTTTTCATTTTGATTACCAAACGCACACCAAACATACATTCATTGGTGTTTATTGGTCAGTCTGAAATTTCTTAAATGGATTCCTGTTTGTTGGTCAGTCTCGTACTATTGAATTGTTGGCTACTTATACTGTTATACATATCATGTAAGTATACAGGCTTGTATTTAACAAACTATTTCTACAATTCAAAGCATATTTCCCTTCTTCTTG	1537	0.378	MDKVDEMGSTNQMLWKPLPYHTPLSLSRSYFKVTIAWNCFGLEDSPLLEDVLYNQSLLSKFSGMANNGVKDPLLSGSLEVTQKANRQLNKRRFLRSRSAPHTNLVSTVTNGNESIPHTASIFQNLHPSFKRVAIYLAVYLGIGALIFYLVRNQIKGLKTDGILDAIYFTIVTMTTVGYGDLVPNSHLTKLLACAFVFSGMALIGLIVSKAADYLVEKQEFLLVKAMRMYQKVGSTEILKEIETNKTRNKLFLVFFLLLILIIAGIIFLVTVEKLDIIDALYCVCSTITTLGYGDKSFSTQAGRIFAVFWILTGTITLAQLFLYIAELNTEIKQKELVKWVLTRKVTNVDLEAADIDDDGTVGAAEFVIYKLKEMGKINQEDISLVMQEFEQLDVDDSGTLSTSDITLAQSS	411

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste8g00290	411	Gene3D	-	230	342	-	-
	Pste8g00290	411	FunFam	Calcium-activated outward-rectifying potassium channel 1	126	221	-	-
	Pste8g00290	411	Pfam	Ion channel	256	327	IPR013099	-
	Pste8g00290	411	Pfam	Ion channel	135	215	IPR013099	-
	Pste8g00290	411	ProSitePatterns	EF-hand calcium-binding domain.	354	366	IPR018247	-
	Pste8g00290	411	ProSitePatterns	EF-hand calcium-binding domain.	393	405	IPR018247	-
	Pste8g00290	411	SUPERFAMILY	Voltage-gated potassium channels	226	347	-	-
	Pste8g00290	411	PRINTS	Two pore domain K+ channel signature	285	313	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Pste8g00290	411	PRINTS	Two pore domain K+ channel signature	359	368	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Pste8g00290	411	PANTHER	POTASSIUM CHANNEL, SUBFAMILY K	132	384	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Pste8g00290	411	Gene3D	-	126	220	-	-
	Pste8g00290	411	FunFam	Two-pore potassium channel 1	230	338	-	-
	Pste8g00290	411	SUPERFAMILY	EF-hand	313	407	IPR011992	-
	Pste8g00290	411	SUPERFAMILY	Voltage-gated potassium channels	129	228	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste8g00290	Pste-Chr8	1588014	1590708	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste8g00290	112	411	Ion Channels	AT5G55630	65.563	5.22e-147	420

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste8g00290	8	1588014	1590708	Pste8g00290	8	1588014	1590708	ECH