Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00278 ATGGTTTGTGAAATGGAAAGCGACTGTATTGAGGACATGGACATTGAAGTCCTCTCTTCAATGTGGCCTGAAGATATTGGCACTGATGTTGGAAAACAGTTCAATATAGAGAAGCCTGGAAGGGACCAAGACATGTTGGAGGAAGTCACAATCATAGAGGAGCCAACTATAGCTGATTTCCAACGTCTCATGGAGCTTACCAATTACACAGATAAAGGGTCTTCTCAGTTGGCTTACCTCATGAAACACTGGGAGTATAAGCAGGCTAATGCAGTTAGGCTTCTCAGAGAGGAACTTGACAACCTTAGCAAACAAAGGCAGGAAGTTGAGCTGAGGAAGTTGGAGATACTGAAAGACAATAGGTTTGAGGAAGAGAATTATGGCGGCGACAAGCGTCCGGTTTCTATATTGGATGAGGTTTACTATACATGGCAAGATGTGACAGTGCCACTCAGGAAAAGTGATGTGGTTGTGCAAAACAAGAGGATTGAAATTGAGGCTGAGTATGACAATGTTGTGTATTGGAAACAGCGGGCACTGCAGTTGGAAAGACAGTTGGAGGCAAGTGTCCAGAGAGAGCAGATACTAATGGACAAGTTGCAAGAAAGTATAAAGACTCTTGAAAGGCAGTCCTCACCTGTGGAAGAACTATCTCAGATTCTGAAGAGGGCAGATAATTTCTTACATTTTATACTCCAAAATGCACCTGTTGTTATTGGCCATCAGGACAAAGAGTTGCGTTATCGCTTTATCTACAACCATTTTCCAAGTTTACAAGAGGAGGACATCATAGGAAAAACAGATGTTGAAATTTTCACCGGATCCGGTGTTAAGGAATCTCAGGATTTCAAGAGGGAAGTAATGGAGAAAGGGTTGCCTGCAAAAAAGGAAATTACTTTTGAGACAGAATTATTTGGGTCAAAAACATTCTTGATTTATGTAGAACCTGTCTTTAGCAAAGCAGGAGAAACAATTGGAATAAACTATATGGGAATGGAAATAACAGATCAGGTAAGAAAAAGAGAAAGAATGGCAAAGCTTAGGGAAGAGATTGCAGTTCAGAAAGCAAAGGAAACAGAACTTAATAAAACCATCCACATTACAGAGGAGACTATGAGAGCAAAACAAATGCTGGCAACAATGTCTCATGAGATAAGATCTCCACTGTCTGGGGTTGTTAGCATGGCTGAAATTCTTTCCACAACGAAACTCGATAAGGAACAAAGGCAGCTATTGGATGTCATGATATCTTCAGGAGATTTGGTTCTTCAACTTATAAATGACATACTTGATCTTTCAAAGGTTGAGTCAGGAGTTATGAAATTGGAAGCTACCAAATTCAGGCCAAGAGAGGTAGTAAAGCATGTACTCCAGACAGCAGCAGCATCATTGCAGAAAATGTTAACCTTAGAAGGGAATGTGGCAGATGATATACCTTTTGAGGTCATTGGAGATGTTTTGAGGATTCGGCAGATTCTTACAAATTTAGTCAGCAATGCGGTAAAGTTTACACATAAAGGCAAAGTTGGTATAAACCTTTACGTTGTTCCAGAACCACCTTCTGCCAAAGCAGAAGGCCATCAAAAGATTATAACAGAACAGTCAACAAATGGGGTGAAGGAAGAGAAACGTGCTTCAACACCGCGAAGCAATGGTGATCAAAATTGTCTTGATGGTCAGAAACACAATGACCATCCTAGCCAAAATCATGCATTCAATGATGAATGTAGATCTTCAGTTAAAAGTGAAAGCTCAATGAATGGAGATGGTGAGGAGCAAGATCATTCAACTGAAACAACAGTGTGGATACGCTGTGATGTATATGACACGGGCATTGGAATACCAGAAAAGGCTATACCTACTTTATTTAGAAGGTACATGCAAGTAAGTGCAGACCATGCTCGAAAGTATGGTGGCACAGGGCTGGGACTAGCAATATGCAAACAATTGGTTGAGCTAATGGGGGGTCGTCTAACAGTGTCTAGCAAAGAACACGGTGGTTCTACCTTCACATTCATACTTCCATACAAGGTTTCAACAGCTTGTGATAATTCTGATGACCCTGATGAACTCTCAGACGTGGATGATAATGACGATGATACCACAGAAGGATTCTTCCAATTCCAACCTCGTACTTTGGGCTCTCTCTTCTCTTCTAATGGACCTACCAGGCCCCAAAATATACTACCAGGCTTCAGAAGCTCAAACAAGTTTAATGGCTTTCCTGAGAATTCTTACTCTTTCCTCACAACCAACATAAGATCAAAAGGAACTAGCTCAACAGATGATGCATCTTCGGTAATTGTTGATGCTCCAGAGATGTCTGAATCAACAAGTTCTTCAAGTCACAGCCCAGAAACAAAACATAAAAATGTGGTTAAGAAAAACAAGCAGAATCAAGATAAGCCACGTGCTAGGTTACAAAATGGTAGTGTAGACTCCTGTCAACATAAGGAGGCAATGACTCTAGGAACTATGTCAAGTGAACCTCAACAAACATGTCAGAGTCAAGAGAAGACAGATATAACCTCCCAATGTGTTATTAGTACTACTAATAACACATCATCAGAAGATATCAAATCCACATTAGGGCCTAAAATTCTTCTTGTTGAAGATAACAAGATCAATGTCATGGTGACACAGTCCATGATGAAGAGGTTAGGCTATAGCATGGATGTTGTGAATAATGGAGTGGAAGCTGTACATGCAGTTCAGCGCCATACTTATGATGTCATTTTGATGGATGTTTACATGCCAGTTATGAATGGTCTTCAAACAACAAAACTCATTCGATCTTATGAGGAAACGGGAAATTGGGAAGCTGCAAGAAAAGCTGGAATTGAACAATGTTTACCAACTTCACATGAATGTTCAGTACCACCTAAAAACCGGATCCACATCATTGCAATGACAGCAAACACAATGTCAGAGAGTGCTGAGGAATGTTATGCAAATGGTATGGACTCGTTTGTGTCAAAACCTGTGACATTCCAAAAATTGAAAGAGTGTCTAGAACAGTACCTGAGGTGA 3030 0.405 MVCEMESDCIEDMDIEVLSSMWPEDIGTDVGKQFNIEKPGRDQDMLEEVTIIEEPTIADFQRLMELTNYTDKGSSQLAYLMKHWEYKQANAVRLLREELDNLSKQRQEVELRKLEILKDNRFEEENYGGDKRPVSILDEVYYTWQDVTVPLRKSDVVVQNKRIEIEAEYDNVVYWKQRALQLERQLEASVQREQILMDKLQESIKTLERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGSGVKESQDFKREVMEKGLPAKKEITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMEITDQVRKRERMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDKEQRQLLDVMISSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKMLTLEGNVADDIPFEVIGDVLRIRQILTNLVSNAVKFTHKGKVGINLYVVPEPPSAKAEGHQKIITEQSTNGVKEEKRASTPRSNGDQNCLDGQKHNDHPSQNHAFNDECRSSVKSESSMNGDGEEQDHSTETTVWIRCDVYDTGIGIPEKAIPTLFRRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVSSKEHGGSTFTFILPYKVSTACDNSDDPDELSDVDDNDDDTTEGFFQFQPRTLGSLFSSNGPTRPQNILPGFRSSNKFNGFPENSYSFLTTNIRSKGTSSTDDASSVIVDAPEMSESTSSSSHSPETKHKNVVKKNKQNQDKPRARLQNGSVDSCQHKEAMTLGTMSSEPQQTCQSQEKTDITSQCVISTTNNTSSEDIKSTLGPKILLVEDNKINVMVTQSMMKRLGYSMDVVNNGVEAVHAVQRHTYDVILMDVYMPVMNGLQTTKLIRSYEETGNWEAARKAGIEQCLPTSHECSVPPKNRIHIIAMTANTMSESAEECYANGMDSFVSKPVTFQKLKECLEQYLR 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00278 1009 SMART HisKA_10 373 438 IPR003661 GO:0000155|GO:0007165
Pste8g00278 1009 SMART REC_2 865 1004 IPR001789 GO:0000160
Pste8g00278 1009 Coils Coil 92 119 - -
Pste8g00278 1009 ProSiteProfiles Response regulatory domain profile. 866 1008 IPR001789 GO:0000160
Pste8g00278 1009 SMART HKATPase_4 484 678 IPR003594 -
Pste8g00278 1009 CDD HATPase_EvgS-ArcB-TorS-like 489 675 - -
Pste8g00278 1009 Coils Coil 183 210 - -
Pste8g00278 1009 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 484 676 IPR003594 -
Pste8g00278 1009 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 12 1008 - -
Pste8g00278 1009 FunFam Probable histidine kinase 1 562 681 - -
Pste8g00278 1009 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 372 438 IPR036097 GO:0000155|GO:0007165
Pste8g00278 1009 PRINTS Bacterial sensor protein C-terminal signature 662 675 IPR004358 GO:0016310|GO:0016772
Pste8g00278 1009 PRINTS Bacterial sensor protein C-terminal signature 603 617 IPR004358 GO:0016310|GO:0016772
Pste8g00278 1009 PRINTS Bacterial sensor protein C-terminal signature 638 656 IPR004358 GO:0016310|GO:0016772
Pste8g00278 1009 Coils Coil 344 364 - -
Pste8g00278 1009 MobiDBLite consensus disorder prediction 772 786 - -
Pste8g00278 1009 CDD REC_hyHK_CKI1_RcsC-like 867 1004 - -
Pste8g00278 1009 MobiDBLite consensus disorder prediction 787 802 - -
Pste8g00278 1009 Gene3D - 439 682 IPR036890 -
Pste8g00278 1009 FunFam Histidine kinase 5 215 350 - -
Pste8g00278 1009 MobiDBLite consensus disorder prediction 572 586 - -
Pste8g00278 1009 Gene3D - 361 438 - -
Pste8g00278 1009 FunFam Histidine kinase 5 859 1009 - -
Pste8g00278 1009 MobiDBLite consensus disorder prediction 772 814 - -
Pste8g00278 1009 Pfam His Kinase A (phospho-acceptor) domain 375 438 IPR003661 GO:0000155|GO:0007165
Pste8g00278 1009 Pfam Response regulator receiver domain 867 935 IPR001789 GO:0000160
Pste8g00278 1009 FunFam Putative histidine kinase 5 361 438 - -
Pste8g00278 1009 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 427 677 IPR036890 -
Pste8g00278 1009 CDD HisKA 372 434 IPR003661 GO:0000155|GO:0007165
Pste8g00278 1009 ProSiteProfiles Histidine kinase domain profile. 380 678 IPR005467 -
Pste8g00278 1009 Gene3D - 859 1009 - -
Pste8g00278 1009 SUPERFAMILY CheY-like 865 1009 IPR011006 -
Pste8g00278 1009 Gene3D PAS domain 214 350 - -
Pste8g00278 1009 MobiDBLite consensus disorder prediction 520 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00278 Pste-Chr8 1542243 1548924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00278 1 541 Histidine Kinase Gene Family AT5G10720 69.316 0.0 749
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pste8g00278 HATPase_c 5.7e-28 CL0025