Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00270 CAGAAATTGAGAAGGCGAAAGTGAGTGATAGAAAGAGAAGAAGAGGAATTTAAGATTCGAAGAGGGAAGAATAAGAAGGAGAAAACCCTAATTGGAGGATGAGGATGTGATATGATCGATGGAAAAACCCTAGAATTGGAGGAGGGTTGTAATCGAGGACGACGTAGATGCTTGTTGTGGTTGGAGTATCGTGGGATCTGAATTGGTTCCTGCAACTGTTGCTCTCCTTCATTGTCGCCGCCGTTGGGGTTCACTTCTTCGTCAAGTTCACCGCTTCCAAGTACTTCATGGTCGACGCCAATTTCGAAGGCGACCACCACGCCCTCGCCGAATCAATGCCCACCGCCGCCGCCGCCGCCGCCGCCGCCGATGATCCTGTATGCGCCGTCTGCGCCACGCCCGCCTCCAAAAAGTGCTCGCGCTGTAAGGCCGTTAGATATTGCTCGCAAGAATGCCAGCTGTCGGATTGGAGGTCTGGGCATAAGACGGTATGCAAGCATGTTCATGACAGCAGTGTGAGAAGCTCGGCTCAGAATGGAGTAGTTAGTCGTGGGTTTAAGGCTGCTGCTGCTGTGGGTAAAAGCTCGCCTTCAATTGCTCTGGTTCCTGGTTGTGGAGCAATTTCCAGGCCAATCAAGCAGGCTAAAGATGTTCTTTTTCCTTATGACGAATTTGTCAAGTTCTTTAACTGGGACAAACCAGGATTTCTTCCTTGTGGGCTGTTGAATTGTGGAAACAGTTGCTTTGCAAATGTGGTTCTTCAGTGCCTCTCATTCACAAGGCCGCTTGTTGCCTACTTGTTGGAGAAGGGCCACCGCAGAGAATGCAGTTGTAATGATTGGTGCTTTCTATGTGAATTTGAAAATCATGTTGAAAGAACAAGGCTAAGTTCACAGGCATTTTCTCCAATGAATATTCTCTCTCGTTTGCCTAATATTGGTGGTACATTGGGCTATGGAAGACAAGAGGATGCTCATGAGTTCATGAGGTTTTCCATTGATACTATGCAATCTGTTTGCCTTGATGAATTTGGTGGAGAAAAAGCTGTTCCTCCAAACCTTCAAGAGACTACCCTTATTCAACACATTTTTGGTGGCCGTCTTCAATCTGAGGTGGTTTGCACAAAATGTGATAAGATTTCAAATCAGTATGAAAATATGATGGACTTGACAGTTGAAATTCATGGAGATGCTGCCTCCTTGGAGGAATGTCTAGATCAGTTTACTGCACGGGAACGGCTTGATGGGGATAATATGTATAAATGTGAGGGGTGCAAGGATTATGTCAAGGCATGGAAACGCCTTACTGTGAAATGTGCTCCAAATATTCTTACTATTGCATTGAAGAGATTTCAGGTTTGTATGTATTATGAACTATTCTTATCAAGTTTTCTCATTTCCTTTTGGGGTGTTCTGTACATGCAGAGTGGGAGGTTTGGAAAACTTAACAAGAGAATAGCCTTCCCTGAGACTTTAAATCTTAGCTCTTATATGAGTGAAGCTGGAGATGGATCTGATGTTTATAAGCTATACGGTGTTGTAGTACATATTGATATGCTAAATGCTTCATTTTTCGGTCACTACATCTGCTACATCAAGGATTTCCAAGGAAACTGGTATAGGATTGATGACTGGAAGGTTATGACTGTGGAGTTGGAAGAGGTACTTTCTCAGGGAGCATACATGCTCTTGTATAGCAGGTGTAGTTCCCGGCCATCAGGCCTTCAAATTCAATCTAGCAAATCTTCAGGTATAGCAGAAGTTCAAAAAACTGAAGTGGAGGTGGAGCCTGGACAAAATGAACAAGATGAATGCCTCTCAAATATGAAGACTTCGACTTATAGTAGAACTTCTGAGATTTTGCCATCTGATACTAGTCCAGAATCGAAAGTTTCTTCCAGCTATGACTGTGAGTCTTCTGCTGGATTGACCTCACAAGCCAAAAGAGAGCAATTTGAGGATGTGGACATGATTGATGTTGATTCTACTGGGATTGCGAATGGGATTTCTTCTAGTGCTGTCAAATCATCTTATCTGCCTATTTCTCGAATTGTCAATGGTTTGGGGAATGCAGATATGATGGACAGATCATTTAAAGACACTTCAGGCTGCAAGGAAGAGCAAGATGATACTGATATGGTTAGGTTTGGTCCTTGTCCGGGTTTACCGAATGACTCATCCTTCTTTGATAAGCATTCTTCTGTTTCAAGGGATCAGGAAAACGTGAAAGAAGATTCAGAACATATAGATGTGGTTAATGGCGAGTTGATTACAGCTAAAGATAGTGCATATTATGGTAATGGATTTGTCAGTGTAAACAAGACTTCTATTCCAGTTGAAGATGCTGGCCCAGAATTTGCTGGCGTTGGTTCTTTTCTCACTGAAAATGACAAAGGAAATGGAATTAAGAAGCTGGAAATATCAGCTGACATCTAGGTGCAGCTATTTTTGTTATTTCTTCATATTATTTAATTATCCCATCATCGAAAAAGGTGGTGAGTTGGGAAATTTTTGTCCGGGGTTTCATTATTTGCAGCAACCTTGGATCTTATTTGTAACATTTCTAGATGGATATGCTAATTTAATTTTACGGATAGAATACAAGTACTTTTGACATTTTCTCCCTTAAC 2629 0.4237 MLVVVGVSWDLNWFLQLLLSFIVAAVGVHFFVKFTASKYFMVDANFEGDHHALAESMPTAAAAAAAADDPVCAVCATPASKKCSRCKAVRYCSQECQLSDWRSGHKTVCKHVHDSSVRSSAQNGVVSRGFKAAAAVGKSSPSIALVPGCGAISRPIKQAKDVLFPYDEFVKFFNWDKPGFLPCGLLNCGNSCFANVVLQCLSFTRPLVAYLLEKGHRRECSCNDWCFLCEFENHVERTRLSSQAFSPMNILSRLPNIGGTLGYGRQEDAHEFMRFSIDTMQSVCLDEFGGEKAVPPNLQETTLIQHIFGGRLQSEVVCTKCDKISNQYENMMDLTVEIHGDAASLEECLDQFTARERLDGDNMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQVCMYYELFLSSFLISFWGVLYMQSGRFGKLNKRIAFPETLNLSSYMSEAGDGSDVYKLYGVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDWKVMTVELEEVLSQGAYMLLYSRCSSRPSGLQIQSSKSSGIAEVQKTEVEVEPGQNEQDECLSNMKTSTYSRTSEILPSDTSPESKVSSSYDCESSAGLTSQAKREQFEDVDMIDVDSTGIANGISSSAVKSSYLPISRIVNGLGNADMMDRSFKDTSGCKEEQDDTDMVRFGPCPGLPNDSSFFDKHSSVSRDQENVKEDSEHIDVVNGELITAKDSAYYGNGFVSVNKTSIPVEDAGPEFAGVGSFLTENDKGNGIKKLEISADI 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00270 755 CDD Peptidase_C19E 182 510 - -
Pste8g00270 755 FunFam Ubiquitin specific peptidase 36 177 293 - -
Pste8g00270 755 Gene3D - 57 115 - -
Pste8g00270 755 FunFam Ubiquitin carboxyl-terminal hydrolase 15 63 113 - -
Pste8g00270 755 Gene3D Cysteine proteinases 180 522 - -
Pste8g00270 755 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 183 512 IPR028889 -
Pste8g00270 755 SUPERFAMILY Cysteine proteinases 179 513 IPR038765 -
Pste8g00270 755 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 96 515 - -
Pste8g00270 755 MobiDBLite consensus disorder prediction 540 592 - -
Pste8g00270 755 Pfam MYND finger 72 109 IPR002893 -
Pste8g00270 755 ProSitePatterns Zinc finger MYND-type signature. 72 109 IPR002893 -
Pste8g00270 755 MobiDBLite consensus disorder prediction 545 591 - -
Pste8g00270 755 SUPERFAMILY HIT/MYND zinc finger-like 70 113 - -
Pste8g00270 755 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 184 199 IPR018200 GO:0004843|GO:0006511
Pste8g00270 755 ProSiteProfiles Zinc finger MYND-type profile. 72 109 IPR002893 -
Pste8g00270 755 Pfam Ubiquitin carboxyl-terminal hydrolase 183 509 IPR001394 GO:0004843|GO:0016579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00270 Pste-Chr8 1507847 1515143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00270 5 523 Miscellaneous Gene Families AT4G31670 61.272 0.0 634