Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00266 AAAAATATCAAAACACGCAGAAGAAGAAGAACAAAGGGCTTCTGAATTTTCGTGTTTTGATAAGAATCTGAGCAAAAAGCAGTTAAATTTGAATTTGAATTCGAATTTGAGTTTTCGTGTTGAGATGGAATCAGAGGATTTGGTGAAACAAGAATTGGAGGAGTTGCAGAAACAATTGGGGAAGAAGCAAAAGTTTGAAGCCTCTGTTTCATCCCTCAAATCCCTTCTCCAACGCTCATATCCATCAGCTTCTCCTTCTCTTCGCAAATCCTTTTACTCAGTTATATGCCGAGTTGCTACTGTGTTGAAGACCAGATATACAGCACCAGGTTTCTGGAATGCTGGGCTGGGCCTTTTTGAGCAGGCTCGTTTGCTTGTTTCTGAACCTTTTGAGAAGGAGCACTTGAAGGCTTGCATTGCTCTGGCTAGGGAACATTTGCATCTAGAAGACAACCCATCACAACCTTCACTACCTGCAGATAATCAGGCACACAGAGGATATCTTTTTGAGGGCCACCTTACGGTTGATCCTGAACCACCACAGCCTCAATGGTTGGTGCAGTCAAACCTCTTGACAGCAGCTGCGACACTCTTTGCTGCTGAATCCTCACAAGCTTCTGCAGCAAATGAAACCACCCAAGAGGGTGCTGCAAATATGCTTCAAGATCTTATGAATAGATTGGAAGAAGTTGTGCCCTTGATGGTGGATGAAGGTACTATGGCTCCAAGAGCTCCTCCTGCCAGTAAAGAGGTTGTGGCAAAACTTCCAATCATTACTCTCACAGAGGAAATCCTGGCTAATATGGGGAAAGATGTAGAGTGTGCAATTTGCAGGGAGAACTTGGTTTTAGATGACAAAATGCAAGAGTTGCCATGCAAACACACATTCCACCCACCATGTCTAAAGCCATGGCTGGATGAGCACAATTCTTGTCCCATCTGTCGGTATGAACTGCAAACTGATGATCATGCCTATGAGAGCTGGAAGGAGCGTGAAAAGGAAGCTGAGGAAGAGAGGAAAGGTGCTGAAAATGCAATTCGAGGTGGTGAATACATGTATGTTTAAATGACCATACAAATTATGGTTAATAACATGGTTGTTCGTGTAACAATGGATTAAAAACTTTCACTTGTTGATTAGTTGTGTATTCTTTATTATTTCAATTTATAGAGATAACTC 1180 0.422 MESEDLVKQELEELQKQLGKKQKFEASVSSLKSLLQRSYPSASPSLRKSFYSVICRVATVLKTRYTAPGFWNAGLGLFEQARLLVSEPFEKEHLKACIALAREHLHLEDNPSQPSLPADNQAHRGYLFEGHLTVDPEPPQPQWLVQSNLLTAAATLFAAESSQASAANETTQEGAANMLQDLMNRLEEVVPLMVDEGTMAPRAPPASKEVVAKLPIITLTEEILANMGKDVECAICRENLVLDDKMQELPCKHTFHPPCLKPWLDEHNSCPICRYELQTDDHAYESWKEREKEAEEERKGAENAIRGGEYMYV 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00266 313 Coils Coil 284 304 - -
Pste8g00266 313 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 151 277 - -
Pste8g00266 313 Pfam Ring finger domain 232 274 IPR001841 -
Pste8g00266 313 SUPERFAMILY RING/U-box 227 280 - -
Pste8g00266 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 280 IPR013083 -
Pste8g00266 313 SMART ring_2 233 273 IPR001841 -
Pste8g00266 313 ProSiteProfiles Zinc finger RING-type profile. 233 274 IPR001841 -
Pste8g00266 313 CDD RING-H2_RNF126-like 232 274 - -
Pste8g00266 313 FunFam E3 ubiquitin-protein ligase RNF181 194 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00266 Pste-Chr8 1489663 1492307 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00266 7 313 C3H Transcription Factor Family AT5G20910 64.495 1.11e-133 380