Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00259 GCATGGTGGTGATTACTAATTAGAAAGCTTCACCCCTTTATCAACCTCCTTTACACTAGGAAATCAATTGTAGTAACCCTCAAGCCAGTGTTTCTTGTGAATAAGCTTGCTCATATAAAGCATCAAAACCTAAATTGAAGAAAAGTTTTTCTCTCCATGCAAAAAGACAAGGAAGTTGCTAGCAAAGAGGGCAAGGATATTGAAATGGATCAAGGAACTGATGAGAATAAGGAAGAAACCCTACCACCAGGATTTAGGTTTCATCCCACAGATGAAGAACTCATCTCTTACTATCTTACAAATAAAATTTCAGATTCTAATTTCACAGGAAAAGCAATAGCTGATGTAGATGTCAACAAATGTGAGCCATGGGAGCTTCCTGAAAAGGCAAAGATGGGGCAAAAAGAATGGTACTTCTTCAGTTTAAGAGATCGTAAATACCCCACAGGTGTGAGAACCAACAGAGCAACCAACGCTGGATACTGGAAAACCACAGGAAAAGACAGAGAGATCCTTAACAGTTCTACATCGGAGTTGGTTGGTATGAAGAAAACTTTGGTTTTCTACAAAGGTAGGGCTCCAAGGGGAGAGAAAAGCAACTGGGTCATGCATGAATATCGTATTCATTCAAAATCCACCTTGAGAACCAACAAGGATGAATGGGTGGTGTGTCGTGTATTCCGCAAGAGTGGTGGTGCAAAAAAGTTCCCTTCAAATTCAAGCCACACAAGAGCAGTGGTGAACCCTTATAGTCTAGGAGTTGGCCCTAGCATGGTGCCACCACCAATGATGCACTTGGGAGACCCTTCACCTCACCATCAATTCCTCTATGGATCAAGAAACTACATGATGAACAACCCTTCAGAGGTAGCTGAATTCACAAGAGTCTTAAGAGGTGGTGGTGGATCCACAAGTGTGAATTTGATGAATTTTCCAATGCAGCATTACTCCCATTTGAACAATGTGTCTGGATCAGTAGGAGGGTTTTCAATTTCTGACCTTAATTTGAATCTGGGAGGAGGAAATGATGCTTCCACAACACAAGCACAAGCAATTTTCAGACCAGTGATGGAACCACCACTGGCTACTGCACCTTCTGCTCACACTATGGCTCAAGTGCACCATGATTTCAGCTCCAATTTGGTGACTTCAACCAATGCTCTTGCTGCTGAGACTGTTGTAGGGTATGGTGCTGATATGAGCACTGCCAATTCTCAT 1218 0.4236 MQKDKEVASKEGKDIEMDQGTDENKEETLPPGFRFHPTDEELISYYLTNKISDSNFTGKAIADVDVNKCEPWELPEKAKMGQKEWYFFSLRDRKYPTGVRTNRATNAGYWKTTGKDREILNSSTSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSTLRTNKDEWVVCRVFRKSGGAKKFPSNSSHTRAVVNPYSLGVGPSMVPPPMMHLGDPSPHHQFLYGSRNYMMNNPSEVAEFTRVLRGGGGSTSVNLMNFPMQHYSHLNNVSGSVGGFSISDLNLNLGGGNDASTTQAQAIFRPVMEPPLATAPSAHTMAQVHHDFSSNLVTSTNALAAETVVGYGADMSTANSH 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00259 354 MobiDBLite consensus disorder prediction 1 36 - -
Pste8g00259 354 ProSiteProfiles NAC domain profile. 29 177 IPR003441 GO:0003677|GO:0006355
Pste8g00259 354 SUPERFAMILY NAC domain 26 177 IPR036093 GO:0003677|GO:0006355
Pste8g00259 354 MobiDBLite consensus disorder prediction 1 34 - -
Pste8g00259 354 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 26 251 - -
Pste8g00259 354 FunFam NAC domain-containing protein 100-like 38 181 - -
Pste8g00259 354 Gene3D NAC domain 38 180 IPR036093 GO:0003677|GO:0006355
Pste8g00259 354 Pfam No apical meristem (NAM) protein 30 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00259 Pste-Chr8 1446841 1450682 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00259 17 289 NAC Transcription Factor Family AT2G24430 57.095 1.62e-105 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste8g00259 NAM 8e-41 No_clan