Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00252 TGCGATTCCCTTGGAATCAAAGCAAAGCTTAGCAGTCTGATTCTTGGTGACCCTCTGAAACATAAGCTCACCTTCCTGACATATCCTTCACACCCTCCTTCAGTTCTGTTCTACAGTCTTAACCCTTAGAGAATCGTTTGTGATATCAAGGTCCTCGTTTAATCCATCAAAGTTTCCATTTGATGCAAACCTTCTGCTGCTGCTGCTGCTGAATTCAATTACTTGATATCTGATGCCTGATACAAAGGCGAAAAGGAACTTTTCCAATGAATTCTAGGTGCTTCCTTCATCCACAACAAGAGTATAGCATGGTTCCATTTTCTTCAAATTCTGCCACAGTGGCTACTGCTCCATACAGGCCTCAACGTCCTTCCCTTTTGGTTCGGATGGCTATGAGAATATCTAGAGCAAGATGGTTTACCTTTTTGAGAAGAGTTTTTCATTACCAAAACGGATCAAGGTCCAATCTTGGCTCCGACCCTTTCAATTCTAGCACTTGGATGATGCTCGAGTTTACTGCCTTGATTGTCCAAATAACCATTACAACATTCACTTTGGCCATTTCCAAGAGGGAGACACCTGTTTGGCCTATGAGGATATGGATTTCTGGTTATGATATTGGCTGTCTTCTTAATCTGCTGCTACTTCATGGCCGCTACCGTCAAATTTATCTGACACAAGGAGATGCTCTCGGCCTTTCTGATATGGAACAGCAGAGAAACAATGAAGAAACCAGGATGTCACATTTGATGAATAAATGCCGGACATTACTTGAGCTTTTCTTCGCCATATGGTTTGTGATGGGCAATGTTTGGGTTTTTGACTCACGTTTTGGATCTTTTCATCAAGCTCCAAAACTCCATGTGCTTTGCATCACTCTGCTTGCTTGGAATGCAATGTGCTACTCTTTCCCTTTCCTACTGTTTCTGTTGTTATGTTGCTGTGTGCCACTAATTAGCACCCTCCTCGGCTACAACATGAACATGGCCTCTTCTCATAGAGGAGCTTCTGATGATCAAATTTCACAACTTCCAAGTTGGAGACATAAAGAAGCCCGTACCAAGTTAGAGCTAGGCAATGACTCTGAAGGCACTGAAAAATGTATCAATGAAGACCCAGAATGCTGTATTTGCTTAGCTAAGTACAAAAACAAAGAAGAAGTTAGAAAATTGCCCTGTTCCCATATGTTCCACCTAAAATGCGTGGATCAATGGCTAAAAATAATATCCTGCTGCCCTCTTTGCAAACAAGGATTAGAAAGGTAGAAATAGCTGATCAACAACGGTCAAAAGGATTAATCTTATTTGATCACATGTATAGTCTTGATATTACTAAGATTTTTTTCTTTGTTTTGTTTCCCTTGAATGTTGGTTTAGTATACTTTACAGTGGTCACTTGAGTGAGTATGTATATGTGCAGAATAGCTCACCAGTGACCAAAACTATACTGTGTATTTTGTTGTAAGGAATGAATCCCATCTTATTTGATCACA 1492 0.4048 MNSRCFLHPQQEYSMVPFSSNSATVATAPYRPQRPSLLVRMAMRISRARWFTFLRRVFHYQNGSRSNLGSDPFNSSTWMMLEFTALIVQITITTFTLAISKRETPVWPMRIWISGYDIGCLLNLLLLHGRYRQIYLTQGDALGLSDMEQQRNNEETRMSHLMNKCRTLLELFFAIWFVMGNVWVFDSRFGSFHQAPKLHVLCITLLAWNAMCYSFPFLLFLLLCCCVPLISTLLGYNMNMASSHRGASDDQISQLPSWRHKEARTKLELGNDSEGTEKCINEDPECCICLAKYKNKEEVRKLPCSHMFHLKCVDQWLKIISCCPLCKQGLER 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00252 332 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 17 329 - -
Pste8g00252 332 ProSiteProfiles Zinc finger RING-type profile. 286 327 IPR001841 -
Pste8g00252 332 SMART ring_2 286 326 IPR001841 -
Pste8g00252 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 331 IPR013083 -
Pste8g00252 332 Pfam RING-like zinc finger 285 313 IPR001841 -
Pste8g00252 332 Coils Coil 144 164 - -
Pste8g00252 332 SUPERFAMILY RING/U-box 278 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00252 Pste-Chr8 1389786 1392608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00252 27 330 C3H Transcription Factor Family AT4G26580 68.954 5.26e-149 421