Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00242 ATGTCCGTAAGCTTAAGGAATCTGTTACTTTCTCCCAAAATCTTCAACCTCACCCTTCTCTTAATAAACTCTCTTTTGTTTCCAAGCTGTTACTCCCTTAATGAGCAAGGCCAAGCTCTATTAGCATGGAAGAGCAGTTTAAACAGTACTTTCGATGCACTAGCATCTTGGAATCCTTCCAACCCAAGCCCATGCAATTGGTTTGGGGTGTACTGCAACTTACAAGGAGAAGTGGTTGAGATAAACCTGAAGTCAGTGAACTTGCAAGGCTTATTACCTTCAAATTTTCAACCTCTCAGGTCCTTGAAGATTCTTGTCCTCTCCTCAACTAACATCACTGGCAGGATTCCAAAGGAAATTGGAGACTATAAAGAGCTTATTGTCATTGATCTCAGTGGCAATTCTCTCTTGGGTGAAATCCCAGAGGAAATTTCCAGGCTGAGCAAACTGCGGACTTTGGCTCTCCATACCAACTTTCTTGAAGGCAACATTCCATCCAAAATAGGAAATTTGTCAAGTCTTGTAAACTTGACACTCTATGACAACAAACTCAGTGGTGAAATTCCAAAGAGTATTGGCTCCTTAACTAAGCTCCAAGTGTTGAGAGTAGGAGGGAACACAAACCTTAAAGGTGAGCTACCATGGGACATCGGAAACTGCACCAACTTGGTGGTGTTAGGCCTTGCAGAAACCAGCATTTCTGGGAGCCTTCCTTCTTCCATAGGGATGTTGAATAGAATTCAGACCATAGCCATTTACACAACTCTGCTGTCAGGCTCTATACCAGAAGAGATAGGGAAGTGCAGTGAGTTGCAGAACTTGTACTTGTATCAGAACTCAATCTCTGGTTCAATCCCAAGGCAAATTGGGGAGCTGGGCAAGCTTCAAAATCTTCTCTTATGGCAAAACAATATAGTAGGTACAATCCCAGAAGAGCTTGGAAGCTGCACTCAACTTGAAGTCATAGACTTGTCAGAAAACCTTCTCACAGGTAGCATACCAACCAGTTTTGGTAACCTATCAAATCTGCAAGGGCTTCAACTGAGTGCTAATAAGATTATAGGCATTATACCACCAGAAATCACAAGTTGCACTTCCCTGACTCAACTTGAAGTTGACAACAATGCCATTTCTGGGGAGATCCCTCCTCTTATTGGCAACTTGAGAAGTTTGACTCTCTTCTTTGCATGGAAGAACAAGTTCACAGGAAAAATTCCTGATAGTCTTTCACAGTGCCAAGACCTTCAGGCACTTGATCTCTCTTACAACAATTTAACTGGTCCAATACCCAAACAATTTTTTGGTCTGAGAAACCTCACTAAACTGCTGCTTCTTTCCAATGATTTGTCAGGCTTGATACCGCCAGAGATAGGTAACTGCACAAATCTCTACCGGTTGAGGTTAAATCACAATAGACTGTCAGGTACCATTCCATCTGAGATTACCAACTTGAAGAACTTGAACTTTTTGGATATGAGCAGCAATCATCTTGCAGGGGAGATTCCTCCTACACTATCCAGATGCCAAAATCTTGAGTTTCTGGATCTCCACTCGAACAGTCTTATTGGCTCTGTTCCAGATAATTTGCCCCAAAACCTGCGGTTAGTCGACCTGTCAGACAACAGGCTAACAGGTGAACTTAGTCATTCCATTGGTTCATTAACTCAACTAACCAAACTTATCTTGGGAAAGAATCAACTCAGTGGAAGCATCCCTGCTGAGATTATATCTTGCTCTAAGTTACAACTTCTGGACTTGGGAAGCAATAGTTTCTCTGGAGAAATTCCTAAGGAAGTTGCTCAAATTCCTTCACTAGAAATCTTTCTCAATCTTAGTTGTAACCAGTTTTCTGGGGAAATCCCACCCCAGTTCTCCAGTCTTGGAAAACTTGGAGTGCTTGATCTCTCCCACAACAAGCTCTCAGGGAGCTTGGATGCTCTCTCTTCCCTTCAGAATCTTGTTTCACTGAATGTTTCCTTCAATGACTTCTCTGGAGAACTACCTAGCACCCCATTCTTCCGGAGACTCCCTCTCAATGATCTTTCAGGAAATGATGGTCTCTACATTGTTGGTGGTGTGGGAACTCCAGCTGGCAGAAAGGAAGCCAAGGGTCATGTCAGATTGGCTATGAAGATTATAATGTCCATTCTCTTAAGCACCAGTGCAGTACTAATACTGCTCACAATGCATGTCTTGCTCCGTGCTCATGTGGCTAACAAAGAACTCAACGGAAACAACAATTGGGTGATAACTTTGTATCAGAAGTTTGAATTCTCTATTGATGACATTGTTCGGAATTTGACATCATCCAATGTGATTGCCACTGGAAGCTCTGGAGTTGTATACAAGGTCACAGTTCCAAACGGCCAGACACTAGCAGTTAAAAAGATGTGGTTATCGGCAGAGTCAGGAGCATTTGCTTCTGAAATTCAAGCACAGGGTTCAATCAGACACAAGAACATCATAAAGCTTCTGGGCTGGGGGTCCAGCAAGAACATGAAGCTGCTATTTTATGAGTACCTCTCAAATGGAAGCCTGAGCTCATTACTTCATGGTTCAGGAAAGGGGAAAGCAGAATGGGAGACCAGATATGATGTTATGTTAGGAGTGGCTCATGCACTTGCATATTTGCATCATGATTGTGTGCCTTCCATATTGCATGGAGATGTCAAAGCCATGAATGTGTTGTTAGGTCCTGGGTATCAACCTTACCTTGCTGACTTTGGCCTAGCAAGAATTGCAACTGAAAAGGGTGATTATGCTAATTCCAAGCCAGTTCAAATACCCTACCTTGCTAGCTCCTATGGATACATGGCTCCTGAACATGCTTCTATGCAGCGGATCACTGAGAAAAGTGATGTGTACAGTTTTGGTGTGGTCCTACTTGAGGCACTGACAGGAAGACACCCCCTAGACCCAACGCTCCCTGGGGGTACACACTTGGTTCAGTGGGTTAGGAACCACTTAGCTAGCAAAGGAGACCCTTATGATATTCTTGACCATAAGCTGAGAGGGAGAACTGATTCTACTGTGCCTGAAATGCTACAAACTCTAGCCGTGTCATTTCTATGTGTCAGTAACCGAGCTGAGGACCGTCCAAATATGAAGGACACTGTTGCAATGCTTAAGGAAATTCGACCAGTTGAAGCCTTGGGCACAGGTCCTGATGATGTGTTAAAGGGAACACATCCTATGCATGGTGTTTCAAGTGGAACTTATAACTGTTCCTTTAATTTCTCAGAGGACTCAATATGCTGAGCAAGCTTTCAATTCATAGCATGTGCATAGTAAAAGGGAATGTCCTTCATATTTG 3313 0.431 MSVSLRNLLLSPKIFNLTLLLINSLLFPSCYSLNEQGQALLAWKSSLNSTFDALASWNPSNPSPCNWFGVYCNLQGEVVEINLKSVNLQGLLPSNFQPLRSLKILVLSSTNITGRIPKEIGDYKELIVIDLSGNSLLGEIPEEISRLSKLRTLALHTNFLEGNIPSKIGNLSSLVNLTLYDNKLSGEIPKSIGSLTKLQVLRVGGNTNLKGELPWDIGNCTNLVVLGLAETSISGSLPSSIGMLNRIQTIAIYTTLLSGSIPEEIGKCSELQNLYLYQNSISGSIPRQIGELGKLQNLLLWQNNIVGTIPEELGSCTQLEVIDLSENLLTGSIPTSFGNLSNLQGLQLSANKIIGIIPPEITSCTSLTQLEVDNNAISGEIPPLIGNLRSLTLFFAWKNKFTGKIPDSLSQCQDLQALDLSYNNLTGPIPKQFFGLRNLTKLLLLSNDLSGLIPPEIGNCTNLYRLRLNHNRLSGTIPSEITNLKNLNFLDMSSNHLAGEIPPTLSRCQNLEFLDLHSNSLIGSVPDNLPQNLRLVDLSDNRLTGELSHSIGSLTQLTKLILGKNQLSGSIPAEIISCSKLQLLDLGSNSFSGEIPKEVAQIPSLEIFLNLSCNQFSGEIPPQFSSLGKLGVLDLSHNKLSGSLDALSSLQNLVSLNVSFNDFSGELPSTPFFRRLPLNDLSGNDGLYIVGGVGTPAGRKEAKGHVRLAMKIIMSILLSTSAVLILLTMHVLLRAHVANKELNGNNNWVITLYQKFEFSIDDIVRNLTSSNVIATGSSGVVYKVTVPNGQTLAVKKMWLSAESGAFASEIQAQGSIRHKNIIKLLGWGSSKNMKLLFYEYLSNGSLSSLLHGSGKGKAEWETRYDVMLGVAHALAYLHHDCVPSILHGDVKAMNVLLGPGYQPYLADFGLARIATEKGDYANSKPVQIPYLASSYGYMAPEHASMQRITEKSDVYSFGVVLLEALTGRHPLDPTLPGGTHLVQWVRNHLASKGDPYDILDHKLRGRTDSTVPEMLQTLAVSFLCVSNRAEDRPNMKDTVAMLKEIRPVEALGTGPDDVLKGTHPMHGVSSGTYNCSFNFSEDSIC 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00242 1085 FunFam Putative LRR receptor-like serine/threonine-protein kinase 752 840 - -
Pste8g00242 1085 Gene3D Ribonuclease Inhibitor 191 330 IPR032675 -
Pste8g00242 1085 FunFam Putative LRR receptor-like serine/threonine-protein kinase 608 693 - -
Pste8g00242 1085 SUPERFAMILY Protein kinase-like (PK-like) 755 1050 IPR011009 -
Pste8g00242 1085 Gene3D Ribonuclease Inhibitor 331 430 IPR032675 -
Pste8g00242 1085 SMART LRR_sd22_2 316 342 - -
Pste8g00242 1085 SMART LRR_sd22_2 627 655 - -
Pste8g00242 1085 SMART LRR_sd22_2 171 197 - -
Pste8g00242 1085 SMART LRR_sd22_2 530 556 - -
Pste8g00242 1085 SMART LRR_sd22_2 484 513 - -
Pste8g00242 1085 SMART LRR_sd22_2 268 294 - -
Pste8g00242 1085 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 471 1046 - -
Pste8g00242 1085 SMART serkin_6 767 1023 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste8g00242 1085 Pfam Protein kinase domain 771 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste8g00242 1085 ProSiteProfiles Protein kinase domain profile. 767 1045 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste8g00242 1085 ProSiteProfiles Leucine-rich repeat profile. 629 651 IPR001611 GO:0005515
Pste8g00242 1085 PRINTS Leucine-rich repeat signature 415 428 - -
Pste8g00242 1085 PRINTS Leucine-rich repeat signature 627 640 - -
Pste8g00242 1085 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 841 1057 - -
Pste8g00242 1085 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 192 283 - -
Pste8g00242 1085 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Pste8g00242 1085 Gene3D Ribonuclease Inhibitor 33 190 IPR032675 -
Pste8g00242 1085 Gene3D Ribonuclease Inhibitor 530 607 IPR032675 -
Pste8g00242 1085 Gene3D Ribonuclease Inhibitor 608 691 IPR032675 -
Pste8g00242 1085 Gene3D Ribonuclease Inhibitor 431 529 IPR032675 -
Pste8g00242 1085 Gene3D Transferase(Phosphotransferase) domain 1 841 1051 - -
Pste8g00242 1085 SUPERFAMILY RNI-like 298 665 - -
Pste8g00242 1085 SMART LRR_typ_2 171 195 IPR003591 -
Pste8g00242 1085 SMART LRR_typ_2 484 508 IPR003591 -
Pste8g00242 1085 SMART LRR_typ_2 554 578 IPR003591 -
Pste8g00242 1085 SMART LRR_typ_2 436 460 IPR003591 -
Pste8g00242 1085 SMART LRR_typ_2 627 650 IPR003591 -
Pste8g00242 1085 SMART LRR_typ_2 292 316 IPR003591 -
Pste8g00242 1085 SMART LRR_typ_2 509 532 IPR003591 -
Pste8g00242 1085 SMART LRR_typ_2 340 364 IPR003591 -
Pste8g00242 1085 SMART LRR_typ_2 99 123 IPR003591 -
Pste8g00242 1085 FunFam Leucine-rich receptor-like protein kinase family protein 335 607 - -
Pste8g00242 1085 Pfam Leucine rich repeat 318 377 IPR001611 GO:0005515
Pste8g00242 1085 Pfam Leucine rich repeat 397 449 IPR001611 GO:0005515
Pste8g00242 1085 Pfam Leucine rich repeat 609 663 IPR001611 GO:0005515
Pste8g00242 1085 SUPERFAMILY RNI-like 80 402 - -
Pste8g00242 1085 Gene3D Phosphorylase Kinase; domain 1 735 840 - -
Pste8g00242 1085 FunFam Leucine-rich receptor-like protein kinase family protein 33 191 - -
Pste8g00242 1085 ProSitePatterns Serine/Threonine protein kinases active-site signature. 885 897 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00242 Pste-Chr8 1344893 1348304 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00242 30 1084 Receptor kinase-like Gene Family AT5G56040 63.594 0.0 1340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pste8g00242 Pkinase 7.4e-35 CL0016