Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00212 GTGTGATTGGTTAAGTTTTTACTAACATAACATTTAGAAAAAAGGTAGGTTTTGTTTGGACGGCCACCGCGTTGAACGGCGGCGAAGGGAAGAATGGCGCATAGGTTGCTGAGAGACCACGAAGCCGACGGTTGGGAGCGCTCCGATTTCCCCATCATCTGCGAATCCTGCCTCGGTGACAGCCCCTATGTTCGAATGACGAGAGCAGAATATGACAAGGAGTGCAAAATTTGTACACGGCCATTCACTGTTTTTAGATGGAGACCTGGTCGAGATGCAAGATATAAGAAAACTGAGATCTGTCAGACATGTAGCAAATTGAAAAATGTCTGTCAAGTGTGCCTTCTGGATCTTGAATATGGATTACCAGTTCAAGTCCGAGACACTGCTCTCAGTATTGATTCCAATGATGCCATTCCAAAGAGTGATGTTAATAGGGAGTATTTTGCTGAAGAGCATGACCGCAAGGCTAGAGCTGGTATAGATTATGAATCCTCTTATGGTAAGGTACGCCCAAATGATACTATCCTAAAGCTTCAAAGAACAACGCCATATTACAAAAGAAATAGGGCACATATTTGCAGTTTCTACATAAGGGGTGAATGTACCAGGGGAGCTGAGTGCCCTTATAGACATGAGATGCCAGAAACTGGGGAATTGTCTCAACAAAATATTAAAGATCGATATTATGGGGTGAATGATCCAGTGGCCTTGAAGCTCCTTGGCAAGGCGGGGGAGATGACTACTCTGGAGGCTCCTGAGGATGAGAGCATTAGAACTCTCTATGTTGGTGGACTTGATGCTAGGGTCACTGAGCAGGATTTGCGGGATCACTTCTATGCCCATGGAGAAATTGAATCCATCAAAATGGTTCTTCAACGGGCTTGTGCTTTTGTAACATATACAACCAGAGAAGGTGCAGAAAAAGCAGCAGAAGAACTTTCCAACAAACTTGTTATTAAGGGCCTAAGGCTGAAGCTGATGTGGGGCAGGCCTCAGACATTGAAACCTGAGTCAGATGGCTCTGATCAAGCAAGACAGCAGGCATCTGTGGCTCACAGTGGATTGTTGCCTCGGGCAGTTATTTCACAGCAGCACAACCATGACCAAACACAAGGAATGCCTTACTTTGAGAATCCACCACCTTCTCAGCAGGAAAGAAGCTACTATCCATCAATGGATCCTCAAAGAATGGGTGCTCTTGTTCATTCTCAAGATGGTCCTCCTGGTGGGACTTCTGGGTCAGGGGAGAACAAGCTGAGTTTGGAGAAGCAGCAAATGCAACATTATAACCATCAGTTGATGCCTCCTCCACCTGGCCAATATCATCATCAGTATTGTCCTCCATATGGTTATATGCTGCCACTTCCCCCTCATCAACAGTACCCAACTCCATACAATGCTGCTGTGGCTCCATCCCAGCCACCAGCTGCTGCAAATCACCCATATCAGCATTCTATGCTGCCAGGGTCTGGACGGGCTGCACATGCCCCAGCTGAATCTGGAACATCAACATTAGGATCACAGCAGCAATAAACTTGCCCATGTACTGATGTTTCTACTATGTTTAAGTTTTTTGTTTTTAAATTGACCGTGTCCGCTGTGAAGATATTCACGCAAGCTGTCAATTTACTATCGCTACTAGTATCGGTAGTTTGATATTGATTACCTTGTGTCTTGAACAAGTTATTTTATGATTTGATTTGCACTTTTGTAACCTTTGGCTTCCTGGTTAGATCATATTCATGCCCAGCTTTAGTATTACTTTGCATTGAATTCTAATGTTATAACTTATGTGCTTTGATTATAAAGTATTTGGTAAATAT 1826 0.4398 MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTRAEYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREYFAEEHDRKARAGIDYESSYGKVRPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPETGELSQQNIKDRYYGVNDPVALKLLGKAGEMTTLEAPEDESIRTLYVGGLDARVTEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQTLKPESDGSDQARQQASVAHSGLLPRAVISQQHNHDQTQGMPYFENPPPSQQERSYYPSMDPQRMGALVHSQDGPPGGTSGSGENKLSLEKQQMQHYNHQLMPPPPGQYHHQYCPPYGYMLPLPPHQQYPTPYNAAVAPSQPPAAANHPYQHSMLPGSGRAAHAPAESGTSTLGSQQQ 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00212 480 Gene3D - 149 205 - -
Pste8g00212 480 FunFam Zinc finger CCCH domain-containing protein 40 213 309 - -
Pste8g00212 480 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Pste8g00212 480 SUPERFAMILY RNA-binding domain, RBD 221 308 IPR035979 GO:0003676
Pste8g00212 480 FunFam Zinc finger CCCH domain-containing protein 4 149 208 - -
Pste8g00212 480 SMART rrm1_1 229 297 IPR000504 GO:0003723
Pste8g00212 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 288 IPR000504 GO:0003723
Pste8g00212 480 MobiDBLite consensus disorder prediction 438 480 - -
Pste8g00212 480 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
Pste8g00212 480 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 377 IPR039171 GO:0003723
Pste8g00212 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Pste8g00212 480 Gene3D - 212 307 IPR012677 -
Pste8g00212 480 Pfam Torus domain 144 194 IPR032297 -
Pste8g00212 480 CDD RRM_RBM22 227 300 - -
Pste8g00212 480 MobiDBLite consensus disorder prediction 334 360 - -
Pste8g00212 480 SMART c3hfinal6 157 183 IPR000571 GO:0046872
Pste8g00212 480 MobiDBLite consensus disorder prediction 334 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00212 Pste-Chr8 1193247 1196872 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00212 221 411 C2H2 Transcription Factor Family AT2G19380 25.822 2.05e-07 51.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g00212 8 1193247 1196872 Pste8g00212 8 1193247 1196872 ECH