LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste8g00211	CGTGCGAAAGAAACGAAAACCCTGAGAGTGAGAGAGAGTGGGATCGGAATTTGGAATAGAAGAAGAAGATGTCGTCGGTGTACGTTCTAGAACCTCCGACGAAGGGGAAAGTGGTGGTGAACACCACGCGCGGCCCTGTGGACATTGAACTCTGGCCGAAAGAGGCTCCGAAAGCCGTTAGGAATTTCGTGCAGCTCTGCCTCGAAAACTACTACGACAACACCATCTTCCACCGCATCATCAAGGACTTCCTCGTCCAAGCCGGCGACCCCACCGCCTCCGGCACCGGAGGTGAAAGCATTTATGGTGGTGTTTTTGCTGATGAATTTCACTCCCGTCTTAAATTCAAGCACAGAGGAATAGTTGCAATGGCCAATGCTGGATCTCCGAATTCCAATGGAAATACAATGTACAATCTTTTAAGACTGGGTGAAGCTGAAACCGATAAGAATGACCGGCCTTTAGATCCCCCAAAGATATTATCAGTTGAGGTGTTATGGAATCCATTTGAAGATATTGTTCCAAGAACACTACAGAAACCTCAAACCGAAGCTAAAGCTGATACAGAAAATAAAGAGCTGAAGAAGAAAGGTGTAAAAAAATTGAATTTGCTTTCTTTTGGGGAAGAAGCTGAAGAAGAGGAAAAGGAGTTAGCATTGGTGAAGCAAAAGATTAAGAGCAGTCACGATGTCTTGAATGATCCTCGTCTTCTAAAGGATGAAGCTCTTAACAGTGAACTGAGTTCATCAAGAAGAGATTTACAGTTATCTGTAAGGGATGCACTTAACTCAAAAAAAGAACCTCAGAAAGATTCAGAACCTGGTAAGATGGCTCATCTAAGTGGTGATGATGATGATGAAGCAGATTTTGATGCAAGAATGCGCATGCAAATACTCAAAAAGCGGAAGGAGTTGGGTGATCACCCTCCCAAGCCTAAAATGCAAAATGGAAGGTCCAGTCCAGAGAAGCATGAAACGTCAGAAGCCAGGTCCAATACTGTAAGCGTTGATGAGGATCAACCAAAGGTGGAAAAGTTGGCCTTGAAGAAAAAGGGCGTAGGATCTGAAGCAAGAGCTGAACGAATGGCTAATGCAGATGCAGATCTGCAACTACTGAATGAAGCTGAGAGAGGAAGACAATTGCAGAAGCAGAAGAAACGAAGACTTCAAGGACGTGAAGATGAAGTTCTGGCAAAACTTGCAAAATTTAAGAATTCTTTATCCACAAAGGCATCACCCCCAACTGCTGAATCTGAAGAAGTTAATAATGAGGAATTGTCTGACTGGAAAGGTGTTAGTTTAAAATTTGCCCCCGAGTCTGGCAAGGACCGCATGTCTCGCAATGAGGACCCAAATGACTATGTTGTGCATGACCCTCTTCTGGAGAAGGGGAAAGAGAAGCAGACACATCACCGCACTGCTGGGAAAGGAAACACATTCACAGGAACTTTGGAGAAAGTTGTTGCATTGAGGTGTTTAGCAGGCATGGTAAGCAAGGACACTGATATTGGTGATGAGATTTGGGGTCAATGTGCAAGTCTTAATCCAAACTGCATCACAGATAACTCCCTACCTTGA	1577	0.4432	MSSVYVLEPPTKGKVVVNTTRGPVDIELWPKEAPKAVRNFVQLCLENYYDNTIFHRIIKDFLVQAGDPTASGTGGESIYGGVFADEFHSRLKFKHRGIVAMANAGSPNSNGNTMYNLLRLGEAETDKNDRPLDPPKILSVEVLWNPFEDIVPRTLQKPQTEAKADTENKELKKKGVKKLNLLSFGEEAEEEEKELALVKQKIKSSHDVLNDPRLLKDEALNSELSSSRRDLQLSVRDALNSKKEPQKDSEPGKMAHLSGDDDDEADFDARMRMQILKKRKELGDHPPKPKMQNGRSSPEKHETSEARSNTVSVDEDQPKVEKLALKKKGVGSEARAERMANADADLQLLNEAERGRQLQKQKKRRLQGREDEVLAKLAKFKNSLSTKASPPTAESEEVNNEELSDWKGVSLKFAPESGKDRMSRNEDPNDYVVHDPLLEKGKEKQTHHRTAGKGNTFTGTLEKVVALRCLAGMVSKDTDIGDEIWGQCASLNPNCITDNSLP	502

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste8g00211	502	SUPERFAMILY	Cyclophilin-like	14	158	IPR029000	-
	Pste8g00211	502	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED	11	113	IPR044666	-
	Pste8g00211	502	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	54	66	IPR002130	GO:0000413\|GO:0003755
	Pste8g00211	502	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	28	43	IPR002130	GO:0000413\|GO:0003755
	Pste8g00211	502	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	97	112	IPR002130	GO:0000413\|GO:0003755
	Pste8g00211	502	MobiDBLite	consensus disorder prediction	383	397	-	-
	Pste8g00211	502	MobiDBLite	consensus disorder prediction	383	402	-	-
	Pste8g00211	502	Coils	Coil	349	369	-	-
	Pste8g00211	502	MobiDBLite	consensus disorder prediction	238	338	-	-
	Pste8g00211	502	Gene3D	-	2	157	IPR029000	-
	Pste8g00211	502	Coils	Coil	181	201	-	-
	Pste8g00211	502	Pfam	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	15	111	IPR002130	GO:0000413\|GO:0003755
	Pste8g00211	502	ProSitePatterns	Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.	49	66	IPR020892	GO:0003755\|GO:0006457
	Pste8g00211	502	ProSiteProfiles	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.	22	186	IPR002130	GO:0000413\|GO:0003755

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste8g00211	Pste-Chr8	1187888	1194068	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste8g00211	9	147	U-box Gene Family	AT5G67530	39.264	7.25e-29	118

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste8g00211	8	1187888	1194068	Pste8g00211	8	1187888	1194068	ECH