Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00208 GCTGTTCACATTTTTATTTTCACTTTCACTCTTATTATTGTCATCACTTTCTTTATTTATCCTCATATCACAACTGAAGTCAGATATCAACCTTCAACACACCAAATTCTAGTGCTAGACAAAGCAAAGTTCTTTGATTTGTCTTCCACCCCCTTAATTTCCTTAATCAATTGGGGAATTTGGTCTAATTTGATTCATTCTCTTTGGGGGGATTTTGAGGATTAGGGTTTTATGGACGATTCTTTTGTTGCCTGATTGGGAAGCTCTTTATGTAATCTGGGTAGAATGATTCTGCGTCTGCATGTGTGAATTCCAGCAAGGGGTATTTGATTGCTGGACACTGGCCAAGAGTTGAAAGATTTTATCTTTTTCTTTAAACGGTTGCGGCTCCTCCTGAAGATTAAGGATCTGAAGATAAGATATGCAATCCAAATCTGAAACTGCAAATCAAGTGAGGCCTGATCCACATTCCTTTACACCTAACAATGTTTATTCCGATCCCTGGTGGCGAGGTATTCAGTATAATCCTATGCCCCAAGCAATGTCAGGGGTGAATGCATCTAATTCATCTTCACTTGAACGCCCAAATGGTGATTCAGAATCCAGTGAAGGTCAATCTTTGTCCAATAATGGGTTGAATGAGGAAGATGATGATGCCACGAAGGAATCACAACCCACCGCTCCTAATCAACCAGGAAATTATGGACAAGATAAACAAGCCAGGCAGCATTCTTCAACATCTGCACCTTCTGTGCGTGATGAATGCCTTACACAGCTTCCTCACCTGGAACTTGTTAGCCATACAATTGTAAGGCTTAGCTCTCATGGATATGCTCCTTTTATTGGACTGCCTCATGCCAGAATGGCTTTGCCCCTTGAGATGGCTCAAGAGCCCGTTTATGTGAATGCCAAGCAATACCAAGGAATTTTGAGACGAAGACAGGCTCGTGCTAAAGCAGAGCTTGAAAAGAAATTAATAAAAGTCAGAAAGCCATATCTTCATGAATCTCGGCATCAACATGCTATGAGAAGAGCACGAGGAAATGGAGGACGTTTTGCAAAGAAAACCGAAGTTGAGGCTTCTAACCACATGAACAAGGAAAAGGATACGGGTATCGGTCCAGTCCCATTTTCTCAGTCAATTAGTTCATCTGATTTTGAGTCATTACACTCGGATTCTGCTGAGAATTGGAACTCAACTTGTGTGAAACAAGATGCAAGAGGATCTCAGGTGCATGAAAGATTTGAAGAACTCAACTGTGCAAATGCTTTGCAGTCATCATCCACTTTTTTTTTGCACTCAGGTGAAGGAGTGAAGGAGGGAGACTGTTTGGGTCAACAAAGGGGAAGCATATCATCTGAACACCCTTCACAACGGCAGCTTGCTATTCAGTAAACCAATGCATGAGGTTAATACTGAGGTTGGTTTCTCATCAAGTGAAGTAGTAGGTTTAGTACTTGGTTATCTATAAACATTGCAATTTGCATGCCAAACGGCAAATCATTCTTGGCTGTATTCTGGTGTTCATGATATGGGGAGAAGAATGATTAATCGGGCCATCATACTTGTGTTGTTGCAGTAAACCAATCCTTCATTATATATTTTTTTTTTTTCATTTGGTACGAAGATAGTTGGTTAGCAAAGTGTAGACTTGATGAAACAAACTCTTTGATGGCTTTACTTTATGTAACTCACCGGTTATTAATGTTAAATACGAGACATCACAGGAGTTTTG 1736 0.4032 MQSKSETANQVRPDPHSFTPNNVYSDPWWRGIQYNPMPQAMSGVNASNSSSLERPNGDSESSEGQSLSNNGLNEEDDDATKESQPTAPNQPGNYGQDKQARQHSSTSAPSVRDECLTQLPHLELVSHTIVRLSSHGYAPFIGLPHARMALPLEMAQEPVYVNAKQYQGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGNGGRFAKKTEVEASNHMNKEKDTGIGPVPFSQSISSSDFESLHSDSAENWNSTCVKQDARGSQVHERFEELNCANALQSSSTFFLHSGEGVKEGDCLGQQRGSISSEHPSQRQLAIQ 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00208 324 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 157 212 IPR001289 GO:0003700|GO:0006355
Pste8g00208 324 MobiDBLite consensus disorder prediction 306 324 - -
Pste8g00208 324 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 12 272 IPR001289 GO:0003700|GO:0006355
Pste8g00208 324 MobiDBLite consensus disorder prediction 303 324 - -
Pste8g00208 324 MobiDBLite consensus disorder prediction 83 112 - -
Pste8g00208 324 PRINTS CCAAT-binding transcription factor subunit B signature 158 180 IPR001289 GO:0003700|GO:0006355
Pste8g00208 324 PRINTS CCAAT-binding transcription factor subunit B signature 189 212 IPR001289 GO:0003700|GO:0006355
Pste8g00208 324 Gene3D - 155 217 - -
Pste8g00208 324 ProSiteProfiles NF-YA/HAP2 family profile. 155 215 IPR001289 GO:0003700|GO:0006355
Pste8g00208 324 MobiDBLite consensus disorder prediction 1 112 - -
Pste8g00208 324 SMART cbf3 154 215 IPR001289 GO:0003700|GO:0006355
Pste8g00208 324 MobiDBLite consensus disorder prediction 1 28 - -
Pste8g00208 324 MobiDBLite consensus disorder prediction 38 73 - -
Pste8g00208 324 ProSitePatterns NF-YA/HAP2 subunit signature. 160 180 IPR018362 GO:0003677|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00208 Pste-Chr8 1177971 1182003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00208 1 324 CCAAT-HAP2 Transcription Factor Family AT3G20910 42.363 4.98e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pste8g00208 CBFB_NFYA 1.1e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste7g01534 7 14078483 14082427 Pste8g00208 8 1177971 1182003 PCT