Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00161 GAGAAATAGAGAGAGAAAGGGGGGACATTTAACATCATTTTCTTTCAGAAAAACAAAATGGGTTATATCAGCAAATTTGCAAGATGATGATGGTCACTGTGTGATATTGTTCCACTCTTGATGCTTCTTTTGGGTGTTCAGAGATCAGTGAGGCAGAAACAACCTGTTATAGAAAAAGAACAAATTTTCCTATCTCATTCACAATTCCTCTCAGTGGGTTTGATTTGGTATGATTATTATCCCATGCTCCTCTTCCTCTTGTTATCTCCTCAACTTCAATCTTCACGGATATCCACAAAAAAACAAACTTTTTGGTTGGACCACTCCGGTTCAAGCATAGTGGAGCTCCTTTCTTGAGATATATTAACTGGGTTTTGTGCAACTTTTCTCTTTTGCCTGGTGGAAATAGTTTAAAGTACCAAACTTTATGCGCCCTGAGGGGTGGATTGGTGAGAGAAAATTTGGGGTTTGCTTCAATTTTGCTTTGTAATTGAAGATTCATGGTGGGGTGGTTGGTGGTTCAGTTTTTTGAATGTTCTGCTCAAGCTGGGCCTTGCCTTGAATCTTCTGGACTGCTAGGTTGGTAAATTTGACAAGGATGTCTGTGAATCGAAGACTTCCTGCTTCAAATGGTAGACTGCCATCGAATATGAAGTCTTGGAAGGTGAATGAACCTGTCCATGAGTCTAATTCTCCCAGGACATGTAGGAGGAAACCCTTGCTTCTTTGGTTTTTTGGCTTTGTTGCTGTAGGGAGTGTTTGGTTCATCTTGAGTTTCAATAGTAAGAATTTGGTGAGCAGGGAGAACGAAGCAATTTGTGAAGAGAGAGCAAGAATCTTGCTACAACGTTACAATGTTAGTAGGAAGCAGATTCATGCTTTAGCTTCCTTGTTCTCTGGATCAGATCAGATTTTATCCAACTGTATTGATGAAAGAAGACTTCAAATGCTGTTAAGCAGCGGCATGGTCAGCACTCCACATTTAATGTGTCCAGAGAATCAGGAGTTACAAAAGGAGCATACATGTGTTGCAGACACTGTAGAACCTATAGAACAACGCCCAAATCTCGATGATTATGTCCAGACAAAGCTTGAATTATCATTCCCATTGAAAAATTATGTGTCATTGATCTCGCTCTCTGCACTTTTGTCTGATTTGGTTAGTTATTTGCTCCGCAGAAAGAAAATTGTGCAATCATGGGAACTGAGGGTATCTGCAATTCGGGATCATATGAGTTCATCTAATTTAATTAAAGGATGCTGGTGGGTCTTGGTTGGAATTATTGTGTCCTATTTCTGTTTACTATGGTGGAGTCAAAAGAAGAAGCTAGTTCAGGGGCATCCAGCTGCACAACAGAAGTGGCTGAAGCATTTTCCACAGGGTCCTTCAAAGAGCGCTGGGAGGTGGAGGAAAAAGTTATTAGTTATATTTGTGTCACTTGGAATAATTGGGTCCTTTTGGCTATTTTGGCACCTAAATAAGGACATTATGCAGAGAAGAGAAGAAATGCTAGCCAATATGTGTGATGAGCGAGCCCGTATGCTGCAAGATCAGTTTAATGTGAGCATGAACCATGTTCATGCTCTGGCTATCCTTGTATCCACCTTTCACCATGGTAAACATCCCTCTGCAATTGACCAGGGTTTAAACTGGTTTCATCTTTTCACTTGTATTTCTGATATTGTTAACACAGTGAATTTGAGTGTGTTAGACAAGACAAGTAAGAAAATTTTTGGAGAATATACAGAGAGTACAGCATTTGAAAGGCCGCTTACTAGTGGTGTTGCTTATGCTTTGAAAGTTCTCCACTCAGATAGGATGCATTTTGAGAAGCAGCATGGGTGGACAATTAAGAAAATGGAAACTGAGAATGAGGCATTAGTCCAAGATTGTATTCCAGAAAATTTGGATCCAGCACCCATTCAAGATGAATATGCACCTGTGATATTTGCTCAAGAAACAGTTTCTCATATTGTATCTATTGACATGATGTCAGGGAAGGAGGACCGGGAGAATATTTTGCGAGCAAGGGCATCTGGAAAGGGGGTTCTCACATCCCCTTTTAAATTACTTAAGTCTAATCACCTGGGTGTAGTACTTACATTTGCTGTCTATAACACTAATCTTCCTTTAGATGCTACACCAGAGCAGCGTATCGAAGCTACTGTGGGGTATCTGGGGGCATCTTATGACGTTCCATCACTTGTGGACAAGCTTCTGCACCAACTTGCCAGCAAGCAAACCATTGTTGTAAATGTTTATGACACGACCAATGCATCTGCACCTATCACAATGTATGGTACTGATGTTGCTGACACTGGCCTACTACACATAAGCAACCTAGATTTTGGGGATCCGCTACGAAAACATGAGATGCACTGCAGGTTCAAGCAGAGGCCTCCATTACCTTGGACAGCAATCAATGCATCAGTGGGGTCACTTGTTATTACTTTGCTTGTGGGTCATATTTTTTATGCAGCAATAAACAGAATAACAAAAGTTGAAGATGACTATCGTAAAATGAGAGAGCTGAAAGTTCGTGCTGAAGCTGCAGAAGTGGCAAAATCCCAGTTTCTTGCTACAGTTTCGCATGAGATCAGGACTCCAATGAACGGTGTTTTAGGTATGCTGCAAATGTTGATGGACACTGAGCTCGATAAAAACCAGATGGATTATGCTCAAACTGCACACAACAGTGGTAAAGATCTCATATCTGTCATAAGTGAGGTTCTTGACCAGGCTAAGATTGAGGCAGGCAAGCTTGAACTTGAAGCTGTAGCTTTTGATCCACGTGCTATTCTGGATGAAGTTTTATCACATTTCTCTGGAAAATCTAACGAAAAAGGAATAGAGCTGGCTGTTTATGCATCCAATCAAGTACCTGAAGTTGTCATTGGTGATCCTAAACGGTTCCGGCAAATAATTACTAATCTTGTTGGCAATTCAGTTAAGTTCACTCATGATACAGGACATGTGTTTGTCTCTGTTCATCTGGCAAATGAAGTCAAGAATCCACTTCATATTATAGATGCAGTGCTAAGAGAAGGCTTAAACATGAACCAAGACATATCAAGCAGAACATATGATACATTAAGTGGGTTTCCTGTATGCAACAGATGGAAAAGTTGGGCGAATTTTAAAAAGTTAAGTAGCACAAATGAGCCTGAAATTATTGAACTATTAGTAATAGTTGAGGACACAGGTATAGGAATTCCTAAAGATGCACAAAGTCGCATATTCACACCTTTTATGCAGGCTGATAGTTCGACCTCCCGAACATATGGTGGAACTGGAATAGGATTGAGTATTAGTAAATGTCTAGTTGACCTCATGGGAGGCGAAATTGGTTTTGTAAGTGAGCCTGGAATTGGAAGTACTTTTTCCTTCACCGGAACTTTCAGAAAAGGAGAAAGCATATCTCTGGATGCAATGTGGCAGAATAATAATTTAGGTTCAGAGTTTCAAGGATTGAGAGCACTAGTGGTAGACAGAAGAAAGATCCGAGCTGAGGTCATAAGATATTATCTGCAAAGATTGGGAATGTCTGTGGATGTAACTTACAGTCTGAATTCTGCATGCTCTTGTCTATCTAATACTTGTAGCATGAGTATGTCACCAAAGTTGGGCATGATTCTTATAGACAAGGATATTTGGGATAAAGAATGTCATATCATATACACAATCAAGAAGCATAGACATAATGGCATCAAAGGGGATCCAATGAACTTTCCGAAGATTTTTCTCCTGGCCACCCACCTTAGCTCCAATGAACAGGATGAGCTCAAGTCAGTTGGTATCGTAGATGATATACTAATGAAGCCTCTTTGTCTTAATTCTTTGATTCAGTGTTACAGAGAATCCCTTGGCACTGGAAAAAGGCGAATAAATAGGAAAAAAGTATCCAAACTTGGGGATTTATTAATGCAGAAACAAATTTTGGTGGTTGATGATAATGCAGTAAACAGAAAAGTTGCAAAAGGTGTTCTACAGAAATATGGAGCAAAAGTTACTGCTGTGGAGAGTGGCAGGGACGCTCTAAAGATGCTTAAACTACCACATAATTTTGATGCTTGTTTCATGGATCTCCAAATGCCAGAAATGGATGGTTTTGAAGCAACGAGGCAAATACGCTGTATGGAGAGAGAGGTAAATGAGAAAATTGCATGTGGGCAAGCATCTGCAGATATGTTTGGTAACATCTCTTATTGGCACATTCCAATACTAGCAATGACAGCAGATTCAACTCAGTCTTCCAATGAAGAGTGCATAGAGTGTGGAATGGATGACTATGTGTCAAAGCCTTTTGAAGAAGAGCAACTCTATATGGCAGTGGCACGTTTCTTCAATTCGGATTCATAATATGGAAGTACCATGTTTGAAATATTTGATTATTAGTGCAGACACCCTGCTGACAAGTGTGGACTGACCTCCAGTGTGATGTTTAGTACGATATCAATCAACATCGAATGCCATGTGTTGGTTTTCCATTAAAAGAGCTAGCAGATGGATTAAATTTGGATAAATTATGTCCTGATATTGTAATGGTTGGACATGCCTCGGCTGATGTGTTCCTAATTGAGACTGCTTGCCAGCATGAAAGATATCAATTTAGCATCATGGATCTCAGCTACGGTCTTGTTTAGTGATAGATGCTGATTTTGAGTTCGAGATATTATCACTTATTGCAGGACAGGAGTCGGTCATCTGAAGACAATTGCATTTTTGTGTACATAACCCGTTTTTTGTTTCTGCTTCCAACCTCTTATTCTTATTTGTATATATTAATATATATTTGGAGCAAGTAGCATAAGATAAAATGTTATAGTGTCGACATCATTATTTTATTTTTTGAGGGCGAAGATGGGAAGCACTGACATATCTTTGAACCCTCGGAATTTTGTAAGTAACATGTAAAGCAAAGTTATTACATGATACTCGCAGAATGGCACCTGTAAACAATATTTTGTGACTTGTGAAATTCCAACTTGTCACTGAGTTGTAACTTTTTTTATCCCAATAAATATTGTCAAGGCGAAAAAAATTCAA 5047 0.3949 MSVNRRLPASNGRLPSNMKSWKVNEPVHESNSPRTCRRKPLLLWFFGFVAVGSVWFILSFNSKNLVSRENEAICEERARILLQRYNVSRKQIHALASLFSGSDQILSNCIDERRLQMLLSSGMVSTPHLMCPENQELQKEHTCVADTVEPIEQRPNLDDYVQTKLELSFPLKNYVSLISLSALLSDLVSYLLRRKKIVQSWELRVSAIRDHMSSSNLIKGCWWVLVGIIVSYFCLLWWSQKKKLVQGHPAAQQKWLKHFPQGPSKSAGRWRKKLLVIFVSLGIIGSFWLFWHLNKDIMQRREEMLANMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKHPSAIDQGLNWFHLFTCISDIVNTVNLSVLDKTSKKIFGEYTESTAFERPLTSGVAYALKVLHSDRMHFEKQHGWTIKKMETENEALVQDCIPENLDPAPIQDEYAPVIFAQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTNLPLDATPEQRIEATVGYLGASYDVPSLVDKLLHQLASKQTIVVNVYDTTNASAPITMYGTDVADTGLLHISNLDFGDPLRKHEMHCRFKQRPPLPWTAINASVGSLVITLLVGHIFYAAINRITKVEDDYRKMRELKVRAEAAEVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDKNQMDYAQTAHNSGKDLISVISEVLDQAKIEAGKLELEAVAFDPRAILDEVLSHFSGKSNEKGIELAVYASNQVPEVVIGDPKRFRQIITNLVGNSVKFTHDTGHVFVSVHLANEVKNPLHIIDAVLREGLNMNQDISSRTYDTLSGFPVCNRWKSWANFKKLSSTNEPEIIELLVIVEDTGIGIPKDAQSRIFTPFMQADSSTSRTYGGTGIGLSISKCLVDLMGGEIGFVSEPGIGSTFSFTGTFRKGESISLDAMWQNNNLGSEFQGLRALVVDRRKIRAEVIRYYLQRLGMSVDVTYSLNSACSCLSNTCSMSMSPKLGMILIDKDIWDKECHIIYTIKKHRHNGIKGDPMNFPKIFLLATHLSSNEQDELKSVGIVDDILMKPLCLNSLIQCYRESLGTGKRRINRKKVSKLGDLLMQKQILVVDDNAVNRKVAKGVLQKYGAKVTAVESGRDALKMLKLPHNFDACFMDLQMPEMDGFEATRQIRCMEREVNEKIACGQASADMFGNISYWHIPILAMTADSTQSSNEECIECGMDDYVSKPFEEEQLYMAVARFFNSDS 1253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00161 1253 Pfam Response regulator receiver domain 1113 1245 IPR001789 GO:0000160
Pste8g00161 1253 ProSiteProfiles CHASE domain profile. 370 594 IPR006189 -
Pste8g00161 1253 CDD HisKA 653 716 IPR003661 GO:0000155|GO:0007165
Pste8g00161 1253 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 642 721 IPR036097 GO:0000155|GO:0007165
Pste8g00161 1253 CDD REC_hyHK_CKI1_RcsC-like 1113 1245 - -
Pste8g00161 1253 FunFam Histidine kinase 4 627 718 - -
Pste8g00161 1253 Pfam His Kinase A (phospho-acceptor) domain 655 720 IPR003661 GO:0000155|GO:0007165
Pste8g00161 1253 Gene3D - 626 718 - -
Pste8g00161 1253 CDD HATPase_EvgS-ArcB-TorS-like 772 931 - -
Pste8g00161 1253 ProSiteProfiles Response regulatory domain profile. 959 1089 IPR001789 GO:0000160
Pste8g00161 1253 FunFam Histidine kinase 4 374 601 - -
Pste8g00161 1253 SUPERFAMILY CheY-like 1111 1249 IPR011006 -
Pste8g00161 1253 Gene3D CHASE domain 375 601 IPR042240 -
Pste8g00161 1253 Coils Coil 632 652 - -
Pste8g00161 1253 SMART HKATPase_4 767 936 IPR003594 -
Pste8g00161 1253 PANTHER TWO-COMPONENT HISTIDINE KINASE 276 1242 - -
Pste8g00161 1253 MobiDBLite consensus disorder prediction 1 32 - -
Pste8g00161 1253 SMART REC_2 1111 1245 IPR001789 GO:0000160
Pste8g00161 1253 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 767 931 IPR003594 -
Pste8g00161 1253 SMART HisKA_10 655 720 IPR003661 GO:0000155|GO:0007165
Pste8g00161 1253 SUPERFAMILY CheY-like 954 1089 IPR011006 -
Pste8g00161 1253 Gene3D - 1107 1252 - -
Pste8g00161 1253 Gene3D - 952 1092 - -
Pste8g00161 1253 ProSiteProfiles Histidine kinase domain profile. 662 936 IPR005467 -
Pste8g00161 1253 ProSiteProfiles Response regulatory domain profile. 1112 1249 IPR001789 GO:0000160
Pste8g00161 1253 Gene3D - 293 345 - -
Pste8g00161 1253 Gene3D - 61 102 - -
Pste8g00161 1253 Gene3D - 719 936 IPR036890 -
Pste8g00161 1253 Pfam CHASE domain 375 567 IPR006189 -
Pste8g00161 1253 SMART CHASE_2 370 569 IPR006189 -
Pste8g00161 1253 MobiDBLite consensus disorder prediction 1 30 - -
Pste8g00161 1253 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 710 931 IPR036890 -
Pste8g00161 1253 PRINTS Bacterial sensor protein C-terminal signature 896 914 IPR004358 GO:0016310|GO:0016772
Pste8g00161 1253 PRINTS Bacterial sensor protein C-terminal signature 920 933 IPR004358 GO:0016310|GO:0016772
Pste8g00161 1253 PRINTS Bacterial sensor protein C-terminal signature 879 889 IPR004358 GO:0016310|GO:0016772
Pste8g00161 1253 PRINTS Bacterial sensor protein C-terminal signature 861 875 IPR004358 GO:0016310|GO:0016772
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00161 Pste-Chr8 915543 926675 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00161 45 1249 Miscellaneous Gene Families AT5G35750 57.224 0.0 1342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pste8g00161 CHASE 7.2e-33 CL0165