Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00156 ATGTGTTGTAAAAATAGGGATAGTGGATTGCAACACATGGAAAGCAGTGAAAAATTGAGTTCTGTTGACACTTCTTGTAGTCATGTTCTTATGGGTGAAGATGGGTGCTCAATTGTAGAAGACTGCAGTGAAGATGATGGTAGTGATGATGATTATGCTAACATCCAAAGGCCTGCGTTTTTGGTTGATGGTGAACCTGATTTTCATTCTGGTCCTCCAGAAGATGGATGGGAATATCTTAGGCGTGTCAGGTGGGAGGCAGATCAAATTCCAAAAGTGAAGGTAGCAAAACTTGATATAGGTAAACTTAGCAAGGAACAAAGTGCTTACATGCCAATGATTCCTGATATTGCAAAGTGTCCAGAGCATCTGTTACCATTGAAACAGTGGGAGGATGTATTTCTGGCTGAGTTTTCGGCATTGAGAATGAATTTCTCATGCCTTGATGGTTCAAATGATCATTTGAAAATTGGTAAGACAAATGATCAACCTGCTGAAGATAAGGATAAAACACTGTCTCCTGAGAATCCTGAATCGAAAACTTCAGTTGATCAAAGTAGCAGCAGCTCCCCTACTCCTCCGTGGCTTTCCGTAATATTAGCAATGGACTCTGTAAAACGGGTATCAACTCTGCTGAAACGAATTAGCTTGCTAGAGGCTGCAGAGACCATGACGAGAAATGATTGCTTGTGGCTTTTTGCTCTGTGTGCAACAGTTGATGCTCCACTTGATGCAGACACGTGTGCTGCTCTCAGGAGTCTGCTGCGAAAGTGTGCTAGCATACGTGCTGGAAAGGTTGAGCTGGATGAGGAGGTTGTTATGTTGAATATATTGGCTGTAATTTCGGGTAGCATTTGCAGTATGAGAGGAAGGATAGATGGCAAAGTTGGAGGAGCGGAAAGACAAGTACGGATTGATCGGTTTAATGCTAAAAATTCATCAAAATTTTGTTTTCTTCTTTCTACTAGAGCTGGGGGATTGGCGATAAACCTTACAACAGCTGACACAGTTATTATATATGACAGTGATTGGAATCCTCATACTGATTTACAAGCTATGGCCAGAGCTCATCGACTTGGACAAACTAACAAGGTGATGATTTATAGGCTTATAACAAGGGGAACAGTTGAAGAAAGGATGATTCGGATGACAAAGAAGAAAATGGTGTTAGAACACCTGGTTGTAGGGAGACTAAAGGCTCAAAACATTAATTAGGCTCGTAGGCCGACTCAGCAGGCCAAACTCATTTGATAGCTCTATGTTATGGTCATCGCACCCAAGGTAGTGTTCGCTTTGGAGGTCATGACAATCTTTTTCTTGAAAAGACACTTCAAGGGATTGAGGGAGAAGAGTGTTTATAAACTATCCTTAGTCTCGACTCCTAGGAAAGAAGAAAGAAGTAATGAATTACAAGGACCATAATAGCTAAAACTCTTAAAGGAGGAGAAAAGCAAAATTCGACAAGGGAGAGGAGTTATATCTCCAGCCCACTAACGAATGTTGATGAGTGCAACATGTCTTCTACAATACTCGTGACAAGTGCACTGACCGTATGTAGTAACTGATAAATATATTGGGTCGATCCACAGAGACTTGTTGATACTCTCAGAAATGTCAATACTTT 1624 0.4113 MCCKNRDSGLQHMESSEKLSSVDTSCSHVLMGEDGCSIVEDCSEDDGSDDDYANIQRPAFLVDGEPDFHSGPPEDGWEYLRRVRWEADQIPKVKVAKLDIGKLSKEQSAYMPMIPDIAKCPEHLLPLKQWEDVFLAEFSALRMNFSCLDGSNDHLKIGKTNDQPAEDKDKTLSPENPESKTSVDQSSSSSPTPPWLSVILAMDSVKRVSTLLKRISLLEAAETMTRNDCLWLFALCATVDAPLDADTCAALRSLLRKCASIRAGKVELDEEVVMLNILAVISGSICSMRGRIDGKVGGAERQVRIDRFNAKNSSKFCFLLSTRAGGLAINLTTADTVIIYDSDWNPHTDLQAMARAHRLGQTNKVMIYRLITRGTVEERMIRMTKKKMVLEHLVVGRLKAQNIN 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00156 404 Gene3D - 272 404 IPR027417 -
Pste8g00156 404 MobiDBLite consensus disorder prediction 157 175 - -
Pste8g00156 404 CDD SF2_C_SNF 250 371 - -
Pste8g00156 404 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 291 396 IPR027417 -
Pste8g00156 404 Pfam Survival motor neuron (SMN) interacting protein 1 (SIP1) 65 284 IPR035426 GO:0000387
Pste8g00156 404 Pfam Helicase conserved C-terminal domain 291 360 IPR001650 -
Pste8g00156 404 MobiDBLite consensus disorder prediction 176 193 - -
Pste8g00156 404 MobiDBLite consensus disorder prediction 157 193 - -
Pste8g00156 404 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 217 404 IPR001650 -
Pste8g00156 404 PANTHER GEMIN2 43 286 - -
Pste8g00156 404 SMART helicmild6 280 360 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00156 Pste-Chr8 882551 886440 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00156 291 403 RAD5 or RAD16-like Gene Family AT5G22750 38.053 7.04e-18 84.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g00156 8 882551 886440 Pste2g01600 2 16845807 16865028 PCT