LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste8g00153	ATGGTTTCTTCTGACAAAAGTGCTGATCAAAATATACCTTCTGATAACTTGCAGCAGAGACTGAGTCCTGATAGTGATACTACATTGTCACAAGGTCGTGATACTAAAAATGATCTGTCCAAACCAGAGGGAGCAACTAGTTTTCCTTCTATTGTAGCCAAAAAGGAAGGGAATGATTCTGATGCTACTGCTTGTGCCTTGGAATCAGATCAAGAAGGAAGCACATGCTCTTTACCACTTGAGAAACATTTGCATAGCTCTAATACTCTTTCACATGAATTGCCGCCATTGCAGTCCATTCTGGAAAGTCCCTCTATAATACGTGAAAAGGTGTCAAAAGATGGCTATAACTGGCGAAAATATGGCCAGAAACATGTTAAGGGGAATGAATTTATAAGGAGCTATTACAAGTGTACACATCCAAACTGCCAGGCAAAAAAGCAATTGCAGCAGTCAAATAATGCCCATATCACAGATTCCATCTGTATCGGTCAGCATAATCATCCTAGACCTCAACTGAACTCCACAGTATCATTCGAGTGTGTTCTACCTGTTGTTGAACCAGCAGCATGCAAATCCTCTTTATCTAATGCAGGAGACAAAACATCCGATGAGCATGATTGTATGCCTAAACAGATCAAGCCTTTACATTCCATTCCGGCTACAAAAGTGTCCCCTGTTAATGAGTTGAAAGCTGCACAATTTCAATTGACTAAGGCAAAGAATCAGGTTCATGAAAATGAGGATCCTGAGTCAAAGCGGCTGAAGAAAGACAATAGTAATGCTGATGTCACTAGAGTTGACATGTCAGCTCGTGAATCTCGTGTTGTTGTTCAGACTTCAAGTGAGGTTGATCTGGTAAATGATGGGTATCGCTGGCGCAAATATGGCCAGAAACTAGTTAAAGGGAATACAAACCCAAGAAGTTATTATCGATGCTCAAATCCTGGATGCCCAGTAAAAAAGCATGTGGAAAGGGCCTCTCATGATTCAAAAATTGTAATAACTACCTATGAGGGACAGCATGATCATGAAATCCCCCCTGGAAGGACTGTCACTCATAATGCAGCTACAAATACTCACACAATGGCTACTAATGGCAAGGCAGGGATCAAATCTGGAGATAACGATGTTGATACAGGGGAACAAAGTGCCTTAGGCTCAGCAAGCAGATTAACCGAGCAACTAAATGGCAAGTTAATTACCAAGTCAAAGGCTGGTGATACGGTTGAGTTTCCTGTGATCAGCCTTTCTAATGATGGTCTTGAAATTAAATTAAGAGAGCAGCAACAACCAAAAGACAAGTTAGATACTAATGACGATCCTGTCAGCATTGACATCATATGCCATTCAAGTTCTGTAATTCCATGTAGATCAAATGAACAGCTGAAAGGTGAGGTAAAAACTATGTCAGAAGGGGATAAGGATTGCCTTAATGTGGTTGACGGTCAGGATATTCCTAGTACAGAAATAGAATTGAATAAGCAATCAGCAGCTGATGCAGAACCGGTCCAAAGCTAAATTTGCAATATTTTTCGGAGCTGCAGCTAGTTACCGAAGAGTATATAAATATTTGACAATGACATAGGTTTTACAGACATATTGTGGAATTATGATTCCTAGTCTTTTCTCTAACCTTCACTTTACTCTTCTTGTGGTTCTCTCCTTGTCTTTGGGCTGGTTGACTAAATATGCAAATTACAATTAATACTATATTGGATATCATAACTTGTATACCATTTTTAATAGAGTTAAATAATATTTACATTTTCGAACAGATGTATACAAAATTCAAATATATTACTCAACATACTCAGTTATTCGCATGTAATCTGCCTTTCTTGATGTAAATTTAGAAAATGCATTGCAGAATTGTAATAATTGAATATAGCAGGAGTAATTC	1903	0.3857	MVSSDKSADQNIPSDNLQQRLSPDSDTTLSQGRDTKNDLSKPEGATSFPSIVAKKEGNDSDATACALESDQEGSTCSLPLEKHLHSSNTLSHELPPLQSILESPSIIREKVSKDGYNWRKYGQKHVKGNEFIRSYYKCTHPNCQAKKQLQQSNNAHITDSICIGQHNHPRPQLNSTVSFECVLPVVEPAACKSSLSNAGDKTSDEHDCMPKQIKPLHSIPATKVSPVNELKAAQFQLTKAKNQVHENEDPESKRLKKDNSNADVTRVDMSARESRVVVQTSSEVDLVNDGYRWRKYGQKLVKGNTNPRSYYRCSNPGCPVKKHVERASHDSKIVITTYEGQHDHEIPPGRTVTHNAATNTHTMATNGKAGIKSGDNDVDTGEQSALGSASRLTEQLNGKLITKSKAGDTVEFPVISLSNDGLEIKLREQQQPKDKLDTNDDPVSIDIICHSSSVIPCRSNEQLKGEVKTMSEGDKDCLNVVDGQDIPSTEIELNKQSAADAEPVQS	506

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste8g00153	506	FunFam	WRKY transcription factor 57	273	347	-	-
	Pste8g00153	506	Pfam	WRKY DNA -binding domain	113	169	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste8g00153	506	Pfam	WRKY DNA -binding domain	288	345	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste8g00153	506	SUPERFAMILY	WRKY DNA-binding domain	108	171	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pste8g00153	506	MobiDBLite	consensus disorder prediction	242	263	-	-
	Pste8g00153	506	ProSiteProfiles	WRKY domain profile.	107	171	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste8g00153	506	MobiDBLite	consensus disorder prediction	1	54	-	-
	Pste8g00153	506	Gene3D	WRKY domain	103	172	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pste8g00153	506	Gene3D	WRKY domain	274	340	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pste8g00153	506	SMART	WRKY_cls	287	346	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste8g00153	506	SMART	WRKY_cls	112	170	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste8g00153	506	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	71	363	IPR044810	GO:0003700
	Pste8g00153	506	SUPERFAMILY	WRKY DNA-binding domain	279	347	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pste8g00153	506	FunFam	WRKY transcription factor	102	172	-	-
	Pste8g00153	506	MobiDBLite	consensus disorder prediction	238	263	-	-
	Pste8g00153	506	ProSiteProfiles	WRKY domain profile.	282	347	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste8g00153	506	MobiDBLite	consensus disorder prediction	1	35	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste8g00153	Pste-Chr8	872004	874766	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste8g00153	97	355	WRKY Transcription Factor Family	AT2G04880	49.057	8.17e-82	260

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Pste8g00153		WRKY	2.7e-25	CL0274