Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00151 ATGGATGGGTCAGATGACGATTCATATTTTTTGCCCAAAAAACGTGGGAAGCCTCAGGAAAAAAATGAGCAAATTCATACAAGTGATACTAACATGGGTGACTTTGTTGAGGACCATCGTGGAAGATCCAGTCGCAGCAAGCCAAATTATGTCATAGATGAGTCAGATGATGATTATGATATTTTGCCTAGAAAAGATGGGAAACCTCTGGAAAAGATTGATAGAAGTGATACTAACATGGATGGCTCAATTGGGGTTAGTGGAAGATTGAATCTTCACAAGGGAAAAATTATTATAGAAGAATCAGATGATGATTCTGATATTTTGCAAAGAAAATTTGGGAAACATAAGGAGAAAATTGAGAGAAGTGATACTCACAAGGTTGAAGGGCTTTGTGGAAGGTCTGGTCGCAGCAAGCGAAATTATGTTATAGATGAGTCAGAAGATGATGGTGATATTCTGCCTAGAAAAAGGGGGAAACTGCAAGAAAAAATTGATAGAAGAGATACTAAAGACAATGCATGTCAAGCTTGTGGAGAAGATGGAAATCTTCTGAGCTGTGTAACATGCACCTATTCTTTCCATCCTAAATGTATAGTCTCACCTCTTAGAAGTGCCTTTCGAGACAATTGGAGTTGCCCGGAGTGTGTTAGCCCACTGAATGATATCGATAAGATATTAGATTGTGAGATGCGTTCTGCAGTAGCTCTGGAAAGTGATACCACAAAATTGGGGTCAAAGCAAAATCTTGTCAAACTATATCTTGTAAAGTGGAAGGGATTATCATATTTGCACTGCACATGGATTCCAGAGGAGCAGTTTCTTAAAGCTTTTAAGAATCATCCAGGTCTAAAGACCAAAGTAAACAACTTCCATCGTCACATAGCATCTGCCAATGAACCTGATGAAGATTTTGTTGCCATTCGACCTGAATGGACAATGGTTGATCGAATACTTGCTTGCAGGGGTCATGATGATAAGAAGGAATATCTTGTGAAGTGGAAAGAACTTCCATATGATGAATGCTACTGGGAGCTCAAATCAGATATCTCTGCATTTCAAACAGAAATAGAAAGATTTAACACATTTCAGTCTAGATCAAGGAAAAATTTGTCTAGGAAGAAAAAAAGTAGTATTAAGGATGATACTGAGCAGCAGAAAGAATTTGTACAGTACGAATGTAGCCCTCAGTTTCTTTCAGGGGGTACGTTGCATCCATATCAACTTGAAGGATTGAACTTCTTACGATTCTCTTGGTACAAGCAAACTCATGTTATACTTGCTGATGAAATGGGACTTGGTAAAACCATACAGAGTATTGCTTTCCTAGCATCCCTTTTTGAAGAGAATGTTTCTCCACATCTGGTGGTTGCTCCTCTTTCAACATTGCGAAACTGGGAGCGTGAATTTGCAACTTGGGCACCTCAAATGAATGTTGTTATGTATTTTGGACCTGCAAAAGCTCGTGCTGTGATTAGAGAGTATGAGTTTTACTTTCCAATGAATAAAAACAAGATCAAGAAAAAGAAATCTAGACTGATGGTTGATGAAAGCAAACAAAAAAGGATAAAGTTTGATGTGCTTTTGACATCATATGAGATGATAAATTCTGATACTTCGTCATTGAAATCTATAAAGTGGGATTGCATGATAGTTGATGAAGGTCACCGTCTCAAAAACAAAGACTCTAAATTATTTTCTTCATTGAAGCAATATTCTAGCAATCATCGTGTGCTTTTAACAGGAACTCCTCTTCAG 1758 0.3777 MDGSDDDSYFLPKKRGKPQEKNEQIHTSDTNMGDFVEDHRGRSSRSKPNYVIDESDDDYDILPRKDGKPLEKIDRSDTNMDGSIGVSGRLNLHKGKIIIEESDDDSDILQRKFGKHKEKIERSDTHKVEGLCGRSGRSKRNYVIDESEDDGDILPRKRGKLQEKIDRRDTKDNACQACGEDGNLLSCVTCTYSFHPKCIVSPLRSAFRDNWSCPECVSPLNDIDKILDCEMRSAVALESDTTKLGSKQNLVKLYLVKWKGLSYLHCTWIPEEQFLKAFKNHPGLKTKVNNFHRHIASANEPDEDFVAIRPEWTMVDRILACRGHDDKKEYLVKWKELPYDECYWELKSDISAFQTEIERFNTFQSRSRKNLSRKKKSSIKDDTEQQKEFVQYECSPQFLSGGTLHPYQLEGLNFLRFSWYKQTHVILADEMGLGKTIQSIAFLASLFEENVSPHLVVAPLSTLRNWEREFATWAPQMNVVMYFGPAKARAVIREYEFYFPMNKNKIKKKKSRLMVDESKQKRIKFDVLLTSYEMINSDTSSLKSIKWDCMIVDEGHRLKNKDSKLFSSLKQYSSNHRVLLTGTPLQ 586
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00151 586 Gene3D - 224 296 - -
Pste8g00151 586 SUPERFAMILY Chromo domain-like 299 362 IPR016197 -
Pste8g00151 586 MobiDBLite consensus disorder prediction 1 79 - -
Pste8g00151 586 Pfam PHD-finger 175 217 IPR019787 -
Pste8g00151 586 CDD CD2_tandem 311 360 - -
Pste8g00151 586 Pfam SNF2-related domain 425 586 IPR000330 GO:0005524|GO:0140658
Pste8g00151 586 ProSiteProfiles Zinc finger PHD-type profile. 172 219 IPR019787 -
Pste8g00151 586 SUPERFAMILY Chromo domain-like 187 298 IPR016197 -
Pste8g00151 586 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 17 586 - -
Pste8g00151 586 CDD CD1_tandem 219 293 - -
Pste8g00151 586 MobiDBLite consensus disorder prediction 1 24 - -
Pste8g00151 586 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 416 586 IPR014001 -
Pste8g00151 586 Pfam Chromo (CHRromatin Organisation MOdifier) domain 245 279 IPR023780 -
Pste8g00151 586 Pfam Chromo (CHRromatin Organisation MOdifier) domain 314 361 IPR023780 -
Pste8g00151 586 ProSiteProfiles Chromo and chromo shadow domain profile. 221 303 IPR000953 -
Pste8g00151 586 ProSitePatterns Zinc finger PHD-type signature. 175 216 IPR019786 -
Pste8g00151 586 Gene3D - 302 362 - -
Pste8g00151 586 Gene3D - 370 586 IPR038718 -
Pste8g00151 586 ProSiteProfiles Chromo and chromo shadow domain profile. 313 375 IPR000953 -
Pste8g00151 586 SMART PHD_3 174 217 IPR001965 -
Pste8g00151 586 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 378 586 IPR027417 -
Pste8g00151 586 SMART ultradead3 400 586 IPR014001 -
Pste8g00151 586 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 223 IPR013083 -
Pste8g00151 586 MobiDBLite consensus disorder prediction 32 78 - -
Pste8g00151 586 SMART chromo_7 220 296 IPR000953 -
Pste8g00151 586 SMART chromo_7 311 365 IPR000953 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pste8g00151 Pste-Chr8 860382 865767 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00151 426 586 RAD5 or RAD16-like Gene Family AT1G02670 31.176 1.88e-14 74.7
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pste8g00151 SNF2_N 2.5e-37 CL0023