Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pste8g00151 | ATGGATGGGTCAGATGACGATTCATATTTTTTGCCCAAAAAACGTGGGAAGCCTCAGGAAAAAAATGAGCAAATTCATACAAGTGATACTAACATGGGTGACTTTGTTGAGGACCATCGTGGAAGATCCAGTCGCAGCAAGCCAAATTATGTCATAGATGAGTCAGATGATGATTATGATATTTTGCCTAGAAAAGATGGGAAACCTCTGGAAAAGATTGATAGAAGTGATACTAACATGGATGGCTCAATTGGGGTTAGTGGAAGATTGAATCTTCACAAGGGAAAAATTATTATAGAAGAATCAGATGATGATTCTGATATTTTGCAAAGAAAATTTGGGAAACATAAGGAGAAAATTGAGAGAAGTGATACTCACAAGGTTGAAGGGCTTTGTGGAAGGTCTGGTCGCAGCAAGCGAAATTATGTTATAGATGAGTCAGAAGATGATGGTGATATTCTGCCTAGAAAAAGGGGGAAACTGCAAGAAAAAATTGATAGAAGAGATACTAAAGACAATGCATGTCAAGCTTGTGGAGAAGATGGAAATCTTCTGAGCTGTGTAACATGCACCTATTCTTTCCATCCTAAATGTATAGTCTCACCTCTTAGAAGTGCCTTTCGAGACAATTGGAGTTGCCCGGAGTGTGTTAGCCCACTGAATGATATCGATAAGATATTAGATTGTGAGATGCGTTCTGCAGTAGCTCTGGAAAGTGATACCACAAAATTGGGGTCAAAGCAAAATCTTGTCAAACTATATCTTGTAAAGTGGAAGGGATTATCATATTTGCACTGCACATGGATTCCAGAGGAGCAGTTTCTTAAAGCTTTTAAGAATCATCCAGGTCTAAAGACCAAAGTAAACAACTTCCATCGTCACATAGCATCTGCCAATGAACCTGATGAAGATTTTGTTGCCATTCGACCTGAATGGACAATGGTTGATCGAATACTTGCTTGCAGGGGTCATGATGATAAGAAGGAATATCTTGTGAAGTGGAAAGAACTTCCATATGATGAATGCTACTGGGAGCTCAAATCAGATATCTCTGCATTTCAAACAGAAATAGAAAGATTTAACACATTTCAGTCTAGATCAAGGAAAAATTTGTCTAGGAAGAAAAAAAGTAGTATTAAGGATGATACTGAGCAGCAGAAAGAATTTGTACAGTACGAATGTAGCCCTCAGTTTCTTTCAGGGGGTACGTTGCATCCATATCAACTTGAAGGATTGAACTTCTTACGATTCTCTTGGTACAAGCAAACTCATGTTATACTTGCTGATGAAATGGGACTTGGTAAAACCATACAGAGTATTGCTTTCCTAGCATCCCTTTTTGAAGAGAATGTTTCTCCACATCTGGTGGTTGCTCCTCTTTCAACATTGCGAAACTGGGAGCGTGAATTTGCAACTTGGGCACCTCAAATGAATGTTGTTATGTATTTTGGACCTGCAAAAGCTCGTGCTGTGATTAGAGAGTATGAGTTTTACTTTCCAATGAATAAAAACAAGATCAAGAAAAAGAAATCTAGACTGATGGTTGATGAAAGCAAACAAAAAAGGATAAAGTTTGATGTGCTTTTGACATCATATGAGATGATAAATTCTGATACTTCGTCATTGAAATCTATAAAGTGGGATTGCATGATAGTTGATGAAGGTCACCGTCTCAAAAACAAAGACTCTAAATTATTTTCTTCATTGAAGCAATATTCTAGCAATCATCGTGTGCTTTTAACAGGAACTCCTCTTCAG | 1758 | 0.3777 | MDGSDDDSYFLPKKRGKPQEKNEQIHTSDTNMGDFVEDHRGRSSRSKPNYVIDESDDDYDILPRKDGKPLEKIDRSDTNMDGSIGVSGRLNLHKGKIIIEESDDDSDILQRKFGKHKEKIERSDTHKVEGLCGRSGRSKRNYVIDESEDDGDILPRKRGKLQEKIDRRDTKDNACQACGEDGNLLSCVTCTYSFHPKCIVSPLRSAFRDNWSCPECVSPLNDIDKILDCEMRSAVALESDTTKLGSKQNLVKLYLVKWKGLSYLHCTWIPEEQFLKAFKNHPGLKTKVNNFHRHIASANEPDEDFVAIRPEWTMVDRILACRGHDDKKEYLVKWKELPYDECYWELKSDISAFQTEIERFNTFQSRSRKNLSRKKKSSIKDDTEQQKEFVQYECSPQFLSGGTLHPYQLEGLNFLRFSWYKQTHVILADEMGLGKTIQSIAFLASLFEENVSPHLVVAPLSTLRNWEREFATWAPQMNVVMYFGPAKARAVIREYEFYFPMNKNKIKKKKSRLMVDESKQKRIKFDVLLTSYEMINSDTSSLKSIKWDCMIVDEGHRLKNKDSKLFSSLKQYSSNHRVLLTGTPLQ | 586 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pste8g00151 | 586 | Gene3D | - | 224 | 296 | - | - | |
Pste8g00151 | 586 | SUPERFAMILY | Chromo domain-like | 299 | 362 | IPR016197 | - | |
Pste8g00151 | 586 | MobiDBLite | consensus disorder prediction | 1 | 79 | - | - | |
Pste8g00151 | 586 | Pfam | PHD-finger | 175 | 217 | IPR019787 | - | |
Pste8g00151 | 586 | CDD | CD2_tandem | 311 | 360 | - | - | |
Pste8g00151 | 586 | Pfam | SNF2-related domain | 425 | 586 | IPR000330 | GO:0005524|GO:0140658 | |
Pste8g00151 | 586 | ProSiteProfiles | Zinc finger PHD-type profile. | 172 | 219 | IPR019787 | - | |
Pste8g00151 | 586 | SUPERFAMILY | Chromo domain-like | 187 | 298 | IPR016197 | - | |
Pste8g00151 | 586 | PANTHER | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED | 17 | 586 | - | - | |
Pste8g00151 | 586 | CDD | CD1_tandem | 219 | 293 | - | - | |
Pste8g00151 | 586 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Pste8g00151 | 586 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 416 | 586 | IPR014001 | - | |
Pste8g00151 | 586 | Pfam | Chromo (CHRromatin Organisation MOdifier) domain | 245 | 279 | IPR023780 | - | |
Pste8g00151 | 586 | Pfam | Chromo (CHRromatin Organisation MOdifier) domain | 314 | 361 | IPR023780 | - | |
Pste8g00151 | 586 | ProSiteProfiles | Chromo and chromo shadow domain profile. | 221 | 303 | IPR000953 | - | |
Pste8g00151 | 586 | ProSitePatterns | Zinc finger PHD-type signature. | 175 | 216 | IPR019786 | - | |
Pste8g00151 | 586 | Gene3D | - | 302 | 362 | - | - | |
Pste8g00151 | 586 | Gene3D | - | 370 | 586 | IPR038718 | - | |
Pste8g00151 | 586 | ProSiteProfiles | Chromo and chromo shadow domain profile. | 313 | 375 | IPR000953 | - | |
Pste8g00151 | 586 | SMART | PHD_3 | 174 | 217 | IPR001965 | - | |
Pste8g00151 | 586 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 378 | 586 | IPR027417 | - | |
Pste8g00151 | 586 | SMART | ultradead3 | 400 | 586 | IPR014001 | - | |
Pste8g00151 | 586 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 154 | 223 | IPR013083 | - | |
Pste8g00151 | 586 | MobiDBLite | consensus disorder prediction | 32 | 78 | - | - | |
Pste8g00151 | 586 | SMART | chromo_7 | 220 | 296 | IPR000953 | - | |
Pste8g00151 | 586 | SMART | chromo_7 | 311 | 365 | IPR000953 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pste8g00151 | Pste-Chr8 | 860382 | 865767 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pste8g00151 | 426 | 586 | RAD5 or RAD16-like Gene Family | AT1G02670 | 31.176 | 1.88e-14 | 74.7 |