Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00146 AACAATCTGGATGAACTTTTTATGCTAATGCACTTCCTTGATACTGGAAAGTTTGGAAGTTTAGAAGAATTCCAGGAAGAGTTTAAGGATATCAATCGAGAGGAGCAGATTTTGAGACTACATAAAATGTTGGCACCACATCTCTTGCGACGAATGAAGAAAGATGTCATGACTGAACTACCTCCGAAAAAGGAACTTATTTTACGTGTTGAATTATGCAGCAAACAGAAAGAATACTACAAGGCAATTTTGACCCGTAATTATCAGATATTAACCCGCCAAGGTGGTGCACAAATTTCTCTTATCAATGTTGTTATGGAACTGCGTAAGCTCTGTTGTCATCCCTATATGTTACAAGGAGTTCAACCAGATCTTAATGATGCAAAAGAATCATACAAGCAATTGCTCGAATCGTCTGGGAAGTTGCAGTTGTTGGACAAGATGATGGTCAAGCTTAAAGAGCAAGGACATAGAGTGCTCATATATTCCCAGTTTCAGGGCATGCTGGATTTGCTTGAAGATTACTGTTTGTACAAGCATTGGCAGTATGAGAGGATAGATGGCAAAGTTGGAGGAGCAGAAAGACAAGTACGGATTGATCGGTTTAATGCTAAAAATTCATCAAGATTTTGTTTTCTTCTTTCTACTAGAGCTGGGGGATTGGGGATAAACCTTACAACAGCTGACACAGTTATTATATATGACAGTGATTGGAATCCTCATGCTGATTTACAAGCTATGGCCAGAGCTCATCGACTTGGACAAACTAACAAGGTGATGATTTATAGGCTTATAACAAGGGGAACAATTGAAGAAAGGATGATTCAGATGACAAAGAAGAAAATGGTGTTAGAGCACCTGGTTGTAGGGAGACTAAAGGCTCAAAACATTAATCAGGAAGAGTTAGATGATATCGTGAGGTATGGCTCAAAAGAGTTATTTGCTGACGAGAAAGATGAACTGGGCAAATCTCGCCAAATTCATTATGATGATGATGCAATAGACAGATTACTGGCTCGTGATCAAGTTGAAGATGAGGAGACTGCTTTGGACGGTGAAGATGAAGATGGATTTTTGAAGGCCTTTAAGGTGGCAAATTTTGAATATGTTGAGAAAGTTGAGCCAGCAGAGGTGGTAGCACTAAAGGAGAATCAATCCTCAACGACTTACTGGGAAGAGTTGTTGAGAGATACATATGAAGAGCATAAAGTTGAAGAATTAAATGCATTAGGCAAAGGGAAGCGAAACCGTAACAAATGGCAAGGGAATGGTTTTAGTGGTTTGGAAGATGTAAGCTCTGATGGTAAAGATGACAGTTTCGAAGTGGATCTTATGGATGATGATTCAAATTCAACTGAAACTACTAGAAGGTTTGGGGTTGGTGATTTTGATTGGAAAGAGTTTACTTCCCGCATAAAACAGAAGAGTTATGAAGAAATCCAAGAGTATGGAAAACTTTTCTTGTCTCATATTGCAGAAGATATAAATGACTCCCCTACATTCACAGATGGTGTTCCAAAAGAAGGACTTCGAATACAAGATGTACTTGTAAGGATTGCTGTTCTGCTCTTGATAAGAGACAAAGTGAAGTTTGCATCAGAAAATCCTCAGACTCGGCTTTTTTCAGATGATATTTTATTACGCTACGCAGGTTTGAAGGGTGCAAAGATATGGACCGAGGAGCATGATTTAATGTTACTGCATGCTGTGTTGAAGCATGGCTATGGAAGGTGGAATGATATTGTTGATGATAAGGATCTGAAGATTCAGAATGTCATCTGTCAGGAGTTGAATATTCCAGTTACAAATATACTAATTCAAGCACAAGTTGGGTCTAAAGTGCAAAATAGTGCAAATATGACAAAGGTGGAGTATGGTTGCAACCCATCTGGTGAAAATAAGAGTTACATAGTAGCTGATGGTACAAATATGACAAGTGTGCAATCGAACTGTATCCAATCTAATAAGGAGAGTGGTATGAGTGACATTGCTGCTGAAGGTGCGCATGGTTCTGGTGATGCTGGGAACCAAGCACAGTTATATCAAAACTCCTCCATATTGCATCAATTTAGAGACATGCAGAAAAAACAGGTTGAGTTCATAAAAAGAAGGTTTCTTCTCTTGGAAAAAGGTCTCAATGCTGAGTACCAGAAAGAATACTGTAGAGATTTAAAAGCAAATGAGGTGGAAAATGAAGAACTTAAAGGTGAGGCCAAGGCTAAAAATGTTCAAAATTCTACATTAGGGGAGACTGACACTCAAATGATTGATCAACTGCCTCAAGTGAAACCAATAGGTGTAGAAGAAATCTCTATTTCTGCATATGATTATGATCCCAATCGATTCCAATTAGTTTGTCTTTACAATGAGATGTGCAAGACTGTGGAGGAAAACACCATGGATTTAGTTCAAACATCTTTGGCAAGAGAAAATGTTATTAAGAATCTTCATCAACTGGAAATCATTTCTGCAGATGTCAACAGAATTCTAAATCAACATGCAGCAGCAATGCCAGTACTAAATTCTTACAACAATTCAAATACTTCATCACAGACTGCATTTGTGGTCTCTGGATCGCTCTCTAGTTCTCAAGATACATGCAAACCTAAAGGTGTGGTAATGGAGTCTGAACCTAAAAAAGAAAGCAATCAGGTCCATCCTTGTACAAGTGATGTATAAAAATACCAAGATTTTGAAAGACATGGAGAACTATTGTTTGGATCAAAACTAACAATGATTCTTATTTAAATGGCAAAACATCATGTGAAAATGTTGAGATG 2780 0.3802 NNLDELFMLMHFLDTGKFGSLEEFQEEFKDINREEQILRLHKMLAPHLLRRMKKDVMTELPPKKELILRVELCSKQKEYYKAILTRNYQILTRQGGAQISLINVVMELRKLCCHPYMLQGVQPDLNDAKESYKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQGMLDLLEDYCLYKHWQYERIDGKVGGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLTTADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLITRGTIEERMIQMTKKKMVLEHLVVGRLKAQNINQEELDDIVRYGSKELFADEKDELGKSRQIHYDDDAIDRLLARDQVEDEETALDGEDEDGFLKAFKVANFEYVEKVEPAEVVALKENQSSTTYWEELLRDTYEEHKVEELNALGKGKRNRNKWQGNGFSGLEDVSSDGKDDSFEVDLMDDDSNSTETTRRFGVGDFDWKEFTSRIKQKSYEEIQEYGKLFLSHIAEDINDSPTFTDGVPKEGLRIQDVLVRIAVLLLIRDKVKFASENPQTRLFSDDILLRYAGLKGAKIWTEEHDLMLLHAVLKHGYGRWNDIVDDKDLKIQNVICQELNIPVTNILIQAQVGSKVQNSANMTKVEYGCNPSGENKSYIVADGTNMTSVQSNCIQSNKESGMSDIAAEGAHGSGDAGNQAQLYQNSSILHQFRDMQKKQVEFIKRRFLLLEKGLNAEYQKEYCRDLKANEVENEELKGEAKAKNVQNSTLGETDTQMIDQLPQVKPIGVEEISISAYDYDPNRFQLVCLYNEMCKTVEENTMDLVQTSLARENVIKNLHQLEIISADVNRILNQHAAAMPVLNSYNNSNTSSQTAFVVSGSLSSSQDTCKPKGVVMESEPKKESNQVHPCTSDV 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00146 892 Pfam CHD subfamily II, DUF1087 381 418 IPR009463 -
Pste8g00146 892 Gene3D - 58 354 IPR027417 -
Pste8g00146 892 Pfam CHD subfamily II, SANT-like domain 454 543 IPR009462 GO:0003677|GO:0006338
Pste8g00146 892 Pfam Helicase conserved C-terminal domain 141 254 IPR001650 -
Pste8g00146 892 Coils Coil 21 41 - -
Pste8g00146 892 Gene3D - 1 52 IPR038718 -
Pste8g00146 892 Pfam CHDCT2 (NUC038) domain 556 591 IPR012957 -
Pste8g00146 892 MobiDBLite consensus disorder prediction 867 892 - -
Pste8g00146 892 Coils Coil 724 744 - -
Pste8g00146 892 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 53 306 IPR027417 -
Pste8g00146 892 Pfam SNF2-related domain 1 118 IPR000330 GO:0005524|GO:0140658
Pste8g00146 892 MobiDBLite consensus disorder prediction 872 886 - -
Pste8g00146 892 SMART DUF1086_2 429 546 IPR009462 GO:0003677|GO:0006338
Pste8g00146 892 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 144 305 IPR001650 -
Pste8g00146 892 SMART DUF1087_2 365 424 IPR009463 -
Pste8g00146 892 SUPERFAMILY Homeodomain-like 557 586 IPR009057 -
Pste8g00146 892 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 1 851 - -
Pste8g00146 892 Gene3D - 513 719 - -
Pste8g00146 892 CDD SF2_C_SNF 139 265 - -
Pste8g00146 892 SMART helicmild6 170 254 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00146 Pste-Chr8 833732 849171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00146 127 305 RAD5 or RAD16-like Gene Family AT5G43530 31.844 1.31e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pste8g00146 SNF2_N 1e-17 CL0023