Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00144 GAAGCCCCTATAAAATGGTCATACCACATCTCGCAGCTTCTCTCTCGGCTTTCTCCTTATAAACTTCCGATGTGTTTCTCTCTTTCTCTCTCCGTAGTTTTGTTTTGTTTATAAAATTTTGCAATCGGTTCGGCAACTGAATTTGCATTTGGTAATCAAATTAATAATTGAAAAAAAAAGGGTGGGGAGGCATAGCCAGATAATGAACCTGCCCTCTGTTCTTAATCTCATTGTGCCTCCCCTCAGATCTTAAGATTTCCCTTCCTAATCTCATTGTGCCTCTTCTCAGATCTTAAGATTTGCCGTCTGGGTCGTCTTCAATCGGAGTGCTTAGCCTTGATTGATTCACTGTTTCATGATTGTTGATGAAGGATCCGATGTTTCCTAACTGAATCCGACAATATCTATATTTGTATTGTTAATACAGTCTCTCAGTTTGTCTTAATTTAAGATAAAATGCAATCAGATAATGGCAAGTTATTTATCGGTGGAATATCATGGGACACAAATGAAGAGCGACTCAGGGAGTATTTCAGCACTTACGGGGAGGTTGTGGAAGCAGTGATAATGAAGGATCGGACAACAGGTAGAGCCAGAGGATTTGGGTTTGTTGTTTTTTCTGACCCAGCTGTTGCAGAAATAGTCATAAAAGAGAAGCACAACATTGACGGAAGGATGGTTGAGGCGAAGAAAGCTGTTCCTAGGGATGATCAGAACATACTGAGTAGAAACAGTGGCAGCATCCATGGTTCTCCTGGTCCAGGTCGTACCAGAAAGATATTTGTTGGAGGTTTAGCATCAACAGTGACAGAGAGTGATTTCAAGAAGTACTTTGACCAGTTTGGGACTATAACAGATGTTGTAGTTATGTATGATCACAACACTCAGAGACCAAGAGGTTTTGGATTTATAACTTATGATTCCGAGGAGGCAGTTGACAAGGTCTTACTCAAGACATTTCATGAATTGAATGGTAAAATGGTTGAGGTCAAGCGAGCAGTTCCTAAGGAGTTATCGCCAGGACCAAGCCGCACCCCACTTGGTGGATATAACTATGGTCTTAGTAGGGTCAATAGTTTTTTAAATGGCTTCACTCAGGGGTATACTCCAAGCGCTGTAGGAGGCTATGGACTTCGAGCAGATGGTAGATTCAGTCCCGTTGCCAGTAGTCGAAGCGGATTTGCTCCATTTGGATCAGGTTATGGAATGAGCATGAATTTTGAGCCTGGTTTGAATGCTGGATTTGGGGGGAATGCAAATTTCAATAGCAATCTTAGCTATGATCGGGGAGTAAATCCTTATTTTATTGGCAACTCCAATAGGTTTGGCAGTCCTGTTGGATATGACAGTGGAAATGGAGGAAACAATTCTTTCTTCAGTTCCGTGACTCGAAACTTGTGGGGTAATGGGGGCCTTAGTTATGGAACAAGTTCTGCAAATTCTAATGCATACATTGGGTCTGGAAGTGGGAGTGTTGGAGGGAACACATTTGGCAACACTGGAGTCAACTGGGGTTCTTCAGCAATTTCTGGGCAGGGAGGAGGGAACAATATGTCACAAAGTAGTGGCAACCTGGGGTATGGAGGTGGTGACAACAATTATAGTCTGGGGACTGGAGGGTATGGAAGAAGTACTGGTACCACTTTTGCACCAACATCTTCATACTCGGCATCAAATGGTGGTGTTGATGGGGCATTTGCAGACATTTACAATAATAGTTCAGTTTATGGGGACCCCACTTGGCGATCTTCAAATTCTGAGAGAGATGGATCTGGTCCCTTTGGCTATGGACTTGGTGGCGCAGCTTCAGATGTTTCTGCCAAGAGTTCTCCTGGTTATGTTGGTGGTTACACTGTTAATAAGAGGCAGCCAAATAGGGGTTTTTTGCCTTTAATGTCTTGCAAAGTTGTGGGTTCTTCTCAGGAATTAAACTGTTTGGACCTTCAATACTCTCGTGGGTCACTCTCCACGTATGCTTTCCTTTTA 1986 0.429 MQSDNGKLFIGGISWDTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAEIVIKEKHNIDGRMVEAKKAVPRDDQNILSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRTPLGGYNYGLSRVNSFLNGFTQGYTPSAVGGYGLRADGRFSPVASSRSGFAPFGSGYGMSMNFEPGLNAGFGGNANFNSNLSYDRGVNPYFIGNSNRFGSPVGYDSGNGGNNSFFSSVTRNLWGNGGLSYGTSSANSNAYIGSGSGSVGGNTFGNTGVNWGSSAISGQGGGNNMSQSSGNLGYGGGDNNYSLGTGGYGRSTGTTFAPTSSYSASNGGVDGAFADIYNNSSVYGDPTWRSSNSERDGSGPFGYGLGGAASDVSAKSSPGYVGGYTVNKRQPNRGFLPLMSCKVVGSSQELNCLDLQYSRGSLSTYAFLL 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00144 510 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Pste8g00144 510 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 474 - -
Pste8g00144 510 Gene3D - 103 189 IPR012677 -
Pste8g00144 510 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Pste8g00144 510 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 69 IPR000504 GO:0003723
Pste8g00144 510 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Pste8g00144 510 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
Pste8g00144 510 CDD RRM2_Hrp1p 107 184 - -
Pste8g00144 510 SMART rrm1_1 7 78 IPR000504 GO:0003723
Pste8g00144 510 SMART rrm1_1 107 179 IPR000504 GO:0003723
Pste8g00144 510 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Pste8g00144 510 SUPERFAMILY RNA-binding domain, RBD 3 104 IPR035979 GO:0003676
Pste8g00144 510 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Pste8g00144 510 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Pste8g00144 510 Gene3D - 4 88 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00144 Pste-Chr8 816695 822796 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00144 8 185 Eukaryotic Initiation Factors Gene Family AT2G36660 32.620 9.71e-15 75.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g00144 8 816695 822796 Pste8g00144 8 816695 822796 ECH