Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00143 GTTTTGTAGATTCTGTTCTCGGTTCTTGCTTCTGGGCACATAAAATAAGAGACAAAGACTGTTAATTTTTCAATTTAATTAAGACCCTTTTGCGAGAAAATGACCGTGGTGAAGGATCAAAGAATGGATGATCTCCGAGACCAGTTTCCTGTAGGAATGCGTGTTCTTGCTGTTGATGATGATGCCACGTATCTCATGGTTTTGGAGACTCTGCTACGGAGGTGTCAATACCATGTTACCGGCACTAAAAATGCAATAACCGCATTGAAATTGTTGAGAGAAAACAAAAACAAGTTTGACCTGGTAATCAGTGACGTCCACATGCCAGACATGGATGGATTTAAGCTGCTTGAGCTTGTGGGGCTTGAGATGGACCTACCTGTCATAATGTTGTCAGCGAATGATGACCCTAAGATGGTGATGAAGGGAATTACACATGGAGCTTGTGATTATCTTCTGAAACCTGTTAGAATTGAGGAGCTACAGAACATTTGGCAGCATGTAGTCAGAAGGAAGTATGATTTGAAGGAACGGAACAAAACCAGCAGCCAAGACAAACCTAATGGTGATTGCTGCAATGGAAGAGGGTCATCAGCAACAGGAAATTCAGATCAAAATGGAAAGCATTCCAGAAAGAGGAAGGATCAGGAGGAAGATGATGATGAGGAGCATGAAAATGATCTTGACAATGAGGACCAATCAACTCAGAAGAAGCCTCGAGTGGTTTGGTCTGTGGATCTGCACCGCAAGTTTGTTTCTGCTGTTAATCAATTAGGCATTGACAAGGCTGTACCTAAAAAGATTCTTGACTTGATGAATGATGAAAAGCTTACAAGGGAGAATGTGGCCAGTCACCTCCAGGCATTTTTCTTATCCTTTAAATATAGACTTTATCTGAAAAGAATTAGCCGTGTGGCCAACCAACAGGCTAATATGGTGGCAGCCTTAGGCACTGCAGATTCATCCTATTTGAGAATGGGTTCTCTGAGTGGAGTTGGACATATGCCTACTTTGACTGGTCCTCAGCAGTTTCATAACAATGCTTTCAGATCCTTTGTACCTGGTGGAATGATTGGTAGATTGAACACTAATGTTGGTCTGAATATGCATGGTTTGTCTTCAGAAACTCTTCAGTTGGGTCATGCACCAAATTTAAACAACTCCATGAATGATCCAATTAAGTTCCAATCAGCTATAGCTTGTGGTAATCAAAATGGTATCCTTGCAATGCCATTGTCTATAGGTTTTGATCAATTGCAACATAATAAGGGTGTTGGTTTTAGTCCTATTCAAGACATGTCCTCTCTTACTGAAGCTAAACAAACTTTTGCCATGTCAAACAATGGTTTGTTATTGAAACCAGATAGGGAAAACAGACAAGAGAGTGGAGTATATAATAATTTAACTTCAGTAGCCTCGCAGCATTCACAATTTTCTCTCCCTTTGCTGGATCATGGTAGGTGTAGTGATATTTGGTCAACTCCTGTGCATTCTTCTGGAACAAATTCTTACCCTCCAAGTGAAGCTTTGCCAGGGGCTAATCTGAGTGGTGCTTCATCCATTACTTCACTATCTAACCAATCCCATGATTCATTGACAGATATTCACCCACAAGGACTCACTTTTACAAATAATTCAGGACTAAGCCATTTTCCATTTCAAGGATGGGAAGACCATAATCATGATAGAAGTTACCATTCAAATGTTATTGGTAACTCAGTAGACTCTCTGATTGATCCAGAAGGCCATACTTCCATGAAATCAACTTTCAACAGAAACTTGGACTTCAATTTTTGTGATCCCTTAAAACATGATGGAATTGTGGGATTGAGTGAAGAAAACTCATTGAAACAACAACAGGGGTACATCATGAACCAGCATAAGTCTCAAAGCAGTCACACTGTTAACAATCTTGGTTCACTGGAAGAGTTTGTCAGTTCAGTGATGCAACAGCAGCAACTAGACAAGGTGAAATTATTGGATGGAACATACTTATGCGACAACAATTACCCTGCTGGAACATCCATGTGACGCAAGTTTGGCAGTAGTATATTTAAGCATCATGTCATGCTTGTTGATGAATTTTGTAGCGTGACACAAGTCTTGATTTACCTCTTTAATTTCCCAGTTTTGTCTTCTTGGTACTTGGTAGTTTTCTCTAGAACATTACTTTCTGCAAGGGCTTCAAAATTGTGAAAATGCATTGTTTATAGACGGGCCCTCTAGTGCATTATGGAGTTAATCATGTTTAGTTTTTTGCAGACATGCTTTTCTAGCAATTTGTAGTGGTC 2291 0.3994 MTVVKDQRMDDLRDQFPVGMRVLAVDDDATYLMVLETLLRRCQYHVTGTKNAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANDDPKMVMKGITHGACDYLLKPVRIEELQNIWQHVVRRKYDLKERNKTSSQDKPNGDCCNGRGSSATGNSDQNGKHSRKRKDQEEDDDEEHENDLDNEDQSTQKKPRVVWSVDLHRKFVSAVNQLGIDKAVPKKILDLMNDEKLTRENVASHLQAFFLSFKYRLYLKRISRVANQQANMVAALGTADSSYLRMGSLSGVGHMPTLTGPQQFHNNAFRSFVPGGMIGRLNTNVGLNMHGLSSETLQLGHAPNLNNSMNDPIKFQSAIACGNQNGILAMPLSIGFDQLQHNKGVGFSPIQDMSSLTEAKQTFAMSNNGLLLKPDRENRQESGVYNNLTSVASQHSQFSLPLLDHGRCSDIWSTPVHSSGTNSYPPSEALPGANLSGASSITSLSNQSHDSLTDIHPQGLTFTNNSGLSHFPFQGWEDHNHDRSYHSNVIGNSVDSLIDPEGHTSMKSTFNRNLDFNFCDPLKHDGIVGLSEENSLKQQQGYIMNQHKSQSSHTVNNLGSLEEFVSSVMQQQQLDKVKLLDGTYLCDNNYPAGTSM 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00143 643 SUPERFAMILY CheY-like 19 145 IPR011006 -
Pste8g00143 643 MobiDBLite consensus disorder prediction 152 172 - -
Pste8g00143 643 MobiDBLite consensus disorder prediction 143 204 - -
Pste8g00143 643 PANTHER TWO-COMPONENT RESPONSE REGULATOR 20 402 IPR045279 GO:0009736
Pste8g00143 643 ProSiteProfiles Response regulatory domain profile. 21 136 IPR001789 GO:0000160
Pste8g00143 643 FunFam Two-component response regulator 201 270 - -
Pste8g00143 643 Gene3D - 19 155 - -
Pste8g00143 643 SMART REC_2 20 132 IPR001789 GO:0000160
Pste8g00143 643 NCBIfam myb-like DNA-binding domain, SHAQKYF class 205 258 IPR006447 GO:0003677
Pste8g00143 643 Pfam Response regulator receiver domain 22 130 IPR001789 GO:0000160
Pste8g00143 643 MobiDBLite consensus disorder prediction 463 505 - -
Pste8g00143 643 Gene3D - 201 270 - -
Pste8g00143 643 CDD REC_typeB_ARR-like 22 136 - -
Pste8g00143 643 PIRSF RR_ARR_type-B 1 642 IPR017053 GO:0003677|GO:0003700|GO:0009736
Pste8g00143 643 Coils Coil 181 201 - -
Pste8g00143 643 SUPERFAMILY Homeodomain-like 202 261 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00143 Pste-Chr8 807798 812633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00143 1 620 Response Regulator Gene Family AT2G25180 44.790 1.70e-139 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pste8g00143 Response_reg 3.8e-23 CL0304