Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00121 ATGTATGTATTTGGTAAAAAGGAAAAAAGAAAATTAACAATCGCTTTCTTGCAGTGCCACAATGGACACACATTGTGTTCCACATGTAAAACAAGGGTGCACAATCGATGTCCCACTTGTAGACAGGAGCTTGGAGATATTAGGTGTCTGGCACTGGAGAAAGTGGCTGAATCCCTTGAGTTACCTTGCAAGTACTACTCCCTTGGATGTCCTGAAATCTTTCCATACTACAGCAAGCTTAAGCATGAGACAGTATGCAATTTTAGACCATATAATTGTCCTTATGCTGGATCAGAGTGCTCTGTTGTTGGGGACATTCCCTTCCTTGTTGCACATTTGAGGGATGATCATAAGGTGGACATGCACACTGGATGCACATTCAACCATCGTTATGTTAAGTCGAATCCTCGTGAAGTAGAGAATGCAACTTGGATGCTCACTGTATTTCATTGTTTTGGTCAATACTTCTGTCTCCACTTTGAAGCTTTCCAGCTCGGCATGGCTCCTGTTTACATGGCATTCCTTCGGTTTATGGGTGATGAGAACGAGGCTCGGAACTACAGCTATAGCCTTGAGGTTGGGGCAAATGGCAGGAAACTCATTTGGGAAGGTACGCCACGAAGTATCCGTGATAGCCATCGTAAAGTCCGGGATAGCCACGACGGTCTCATTATTCAACGGAACATGGCCTTGTTCTTCTCTGGTGGGGATAAGAAGGAGCTGAAACTAAGAGTCACAGGAAGAATATGGAAGGAACAACAAAATCCAGATGCTGGGGTGTGCATACCAAATCTTTGCAGCTAATTTAATTTGGAGGGCTCTTTCAATGTTTGTGTGTTGGGACACTGCCGCTGTATCTACTACACCAACTTTGTGTATGTTGTACTAGTGTAAGGCACTAAGATGGCTTTTGAAGTTTTCAGTTTTCCCAAGTTGTGTAATAAAACAAGAATGTCTTCCTTTAAATTTGCTTCATCAGAATGAGACTGGACCCTAATTTGGATCTATTTTGTGTGAGGTTCTCATGACTTGATTGAGTTGTCTTGGTCTGAAAATCACGTTGGTTGCCATCAAGGAAGTGCTTTCTCAAGAGGGCCACACAGTGACAAAACAAATGTTACAACATCTCATCAGAAATTTGTATATTCTTTTCACTGTGAAGACTATTTTTTGAAGTGTCTGTGTAACGCAAATTCCTGTAGAAATACCGTTCAATGTTGAAAACACTCAACTTGTGGTTGTTTGACTTGCTTTCATAGTTTTGGTTTGTACCTAATTTATGCTTGCAAATGATGTTCATGGTCCACCGGATAGTACATGTAATATGTAAGTTGCTTCATCTCGTATCTTCTGTTATGAACAGCAAGGGTTCCTTCACTTGCAATCTAAGAATTTTTAGTGATATTTTAG 1410 0.4099 MYVFGKKEKRKLTIAFLQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCNFRPYNCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDKKELKLRVTGRIWKEQQNPDAGVCIPNLCS 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00121 267 CDD Sina 119 247 - -
Pste8g00121 267 FunFam E3 ubiquitin-protein ligase SINAT3 55 113 - -
Pste8g00121 267 Pfam Seven in absentia protein family 47 246 IPR018121 GO:0005737|GO:0006511|GO:0007275
Pste8g00121 267 FunFam E3 ubiquitin-protein ligase SINAT5-like 114 246 - -
Pste8g00121 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 111 IPR013083 -
Pste8g00121 267 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 112 246 IPR008974 GO:0005515
Pste8g00121 267 ProSiteProfiles Zinc finger SIAH-type profile. 58 118 IPR013010 GO:0008270
Pste8g00121 267 SUPERFAMILY TRAF domain-like 58 250 - -
Pste8g00121 267 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 17 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00121 Pste-Chr8 699243 701726 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00121 18 253 C3H Transcription Factor Family AT2G41980 82.203 2.49e-149 417