Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00086 AGGGAAAGGAAAAGAAGGGAAAGGGCGGGAGGGGGAAAGAAAGAAGAATTGGAAAAGGGAGAGAGTATTCAAAAGGGGAGAGAGAGGAGGGAAAGGGAAAGGGAAAGGGAAATGGAAATGAAAATGGCTTGGCTTCCCTGCGACTCGGATGGGGTGTGCATGGTATGCAAAGAGAAACCAGCTCAGTCAGAGACACTGGGGTGTCGGACTTGCACGAGTCCATGGCACCTTTCTTGTCTCCCTTCGCCGCCTCTCTCCTCCCTTTCAGACTCTGAGTGGGACTGTCCCGATTGCTCCTCCCTCACCTCTCACCAAGCCCCTCAAACCCACCTCCTTTCCGCCATTCACGCCATCCAGGCCGACCCCTCTCTCTCCGATCAACAGAAGGCCATCAAACGCCAACAACTCCTCGCCGGCTCTTCCTCCTCCAAACCCAAACATCAAGATCTTCTTCTTTTTGACGGAACCTTAAATTGCTCCATTTGCATGCAACTGCCCGACAGACCCGTCACGACTCCTTGTGGGCACAATTTCTGCCTGAGATGCTTTGAGAGATGGATAGCACAGGGGAAGCGGACCTGTGCAAACTGCCGTGCTCAAATCCCATCCAAGATGGCGAGTCAGCCGAGGATTAACTCTCAACTCGCCATGGCCATCCGAGTGGCTAAGGTGGCCAAGAGAGGAACGTCGGGCCCACCAAAGCTCTCTCAGTTTGTGCGCAATCAAGACCGCCCTGACACTGCCTTCACGACGGAGCGAGCCAAGAAGACTGGAAAGGCCAATGCTTGCAGTGGTAAGATATTTGTGACGGTCCCTCCTGATCACTTTGGACCCATTCCTCCTGAAAATGATCCCAGCAGGAACCGCGGTGTTCTTGTTGGCGACACTTGGGATGACCGGATGGACTGCCGCCAGTGGGGCGCTCATCTCCCTCACGTTGCCGGCATTGCTGGTCAGAGTGCTTATGGTGCCCAGTCTGTTGCCCTCTCCGGTGGCTACCTCGACGACGAGGATCATGGTGAATGGTTTCTTTACACTGGCAGTGGTGGCAGAGATTTAAGTGGCAACAAACGCACCAACAAGCTCCAATCCTTCGACCAGAAGTTTGAAAACATGAATCAAGCCCTCCGTCTAAGCTGCCTCAAGGGTTACCCCGTTCGGGTTGTAAGGTCTTCTTCTCCTCCTTACCATCCCCTCCCTTTCTTCTTCCTTTATTCAACTACTTCTCTCTTTTTCCCTTCCTTCCTTAGATCTCACAAGGAAAAACGATCTTCTTACGCACCCGAATCTGGAGTCCGTTACGATGGTGTCTATAGAATCGAAAAATGCTGGCGCAAGATTGGTATACAGGGTTACAAGGTTTGTAGGTATTTGTTCGTCAGATGTGACAATGAGCCTGCTCCCTGGACAAGTGATGAAATTGGAGATCGTCCACGTCCACTGCCTACCATTAATGAGTTGAAGGATGCAATCGATATAACTGAAAGGAAGGGTGATCCATCATGGGATTACGACGAGGAAAAGGGATGCTGGTTGTGGAAGAAGCATCCACCAGAGAGCAAGAAATCAGTGGAAATTAAATCTGAAGATGGAACAACAGTCAGAGTTAAACGAAAAGCAAAAGTTGTGTCTGTGAAAGAAAGATTATTGAAAGAGTTTGGTTGCCAAATATGTCGCAAAGTGTTGGCTTTCCCTCTTACTACACCTTGCGCTCACAACTTCTGCAAAGCCTGTTTGGAGGGTGCCTTCTCTGGCCAAAGTTTCATTAGAAATAGGGCATGTGGAGGTGGACGCACTTTGCGAGCACAGAAGAATGTTATGAAATGCCCATCATGTTCAAACGACATCGCTGACTATCTTCAGAATCCACAGGTTAATAGAGAAATGGTGGCTGTTATAGAATCATTACAATGCCAGGCCGAAGACGAAAATTCTGAAGAGTCATGTGATAAAAATGATGAAAATCTGCATGATGCAACAGAGGTCTCAAAACCCAGTGATTCTAGTGACAAGGTCCTCGAGGAAATTAAGGACAACGATCTGAATCAGCCAAACAAGCGAAGGAAGGAGTGAAGGATGGCTGCCAGTTATTTTGGCCCTTTTTAGATTATAGATTTTCATTAGGAAGGGACGGACTGCGGATACGATTTGATGCGAGCAGAGATTATTAGATATGGAAATTATTTGGCTTTTTGATCAATCTTTACATGTGACAGCAAATTGGTATCTCCTTATTGTGTGTGGGTTTTCTGTCCTAAAAATGAGAATGAATACATTACCATGTAATGCATCTTACTGCATTATATGTTTTTTATTAAAACATTATGATGTGAACTACTATTAATCAAGTTTAAATTCAATGTTGAATTCTTTTCTGGTAAGTTATTTAACCAATGATTAAATAATAATCTTACTGCA 2418 0.4673 RERKRRERAGGGKKEELEKGESIQKGRERREREREREMEMKMAWLPCDSDGVCMVCKEKPAQSETLGCRTCTSPWHLSCLPSPPLSSLSDSEWDCPDCSSLTSHQAPQTHLLSAIHAIQADPSLSDQQKAIKRQQLLAGSSSSKPKHQDLLLFDGTLNCSICMQLPDRPVTTPCGHNFCLRCFERWIAQGKRTCANCRAQIPSKMASQPRINSQLAMAIRVAKVAKRGTSGPPKLSQFVRNQDRPDTAFTTERAKKTGKANACSGKIFVTVPPDHFGPIPPENDPSRNRGVLVGDTWDDRMDCRQWGAHLPHVAGIAGQSAYGAQSVALSGGYLDDEDHGEWFLYTGSGGRDLSGNKRTNKLQSFDQKFENMNQALRLSCLKGYPVRVVRSSSPPYHPLPFFFLYSTTSLFFPSFLRSHKEKRSSYAPESGVRYDGVYRIEKCWRKIGIQGYKVCRYLFVRCDNEPAPWTSDEIGDRPRPLPTINELKDAIDITERKGDPSWDYDEEKGCWLWKKHPPESKKSVEIKSEDGTTVRVKRKAKVVSVKERLLKEFGCQICRKVLAFPLTTPCAHNFCKACLEGAFSGQSFIRNRACGGGRTLRAQKNVMKCPSCSNDIADYLQNPQVNREMVAVIESLQCQAEDENSEESCDKNDENLHDATEVSKPSDSSDKVLEEIKDNDLNQPNKRRKE 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00086 690 MobiDBLite consensus disorder prediction 650 690 - -
Pste8g00086 690 Pfam SAD/SRA domain 289 464 IPR003105 -
Pste8g00086 690 ProSiteProfiles YDG domain profile. 286 461 IPR003105 -
Pste8g00086 690 Pfam RING-type zinc-finger 555 610 IPR027370 -
Pste8g00086 690 ProSitePatterns Zinc finger PHD-type signature. 53 98 IPR019786 -
Pste8g00086 690 SUPERFAMILY RING/U-box 155 205 - -
Pste8g00086 690 SMART G9a_1 281 465 IPR003105 -
Pste8g00086 690 SUPERFAMILY PUA domain-like 272 495 IPR015947 -
Pste8g00086 690 ProSiteProfiles Zinc finger RING-type profile. 159 198 IPR001841 -
Pste8g00086 690 SUPERFAMILY RING/U-box 539 587 - -
Pste8g00086 690 SUPERFAMILY FYVE/PHD zinc finger 39 101 IPR011011 -
Pste8g00086 690 ProSitePatterns Zinc finger RING-type signature. 570 579 IPR017907 -
Pste8g00086 690 ProSiteProfiles Zinc finger RING-type profile. 555 613 IPR001841 -
Pste8g00086 690 Pfam Zinc finger, C3HC4 type (RING finger) 157 202 - -
Pste8g00086 690 SMART PHD_3 52 99 IPR001965 -
Pste8g00086 690 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 541 657 - -
Pste8g00086 690 Gene3D - 257 479 IPR036987 -
Pste8g00086 690 ProSiteProfiles Zinc finger PHD-type profile. 50 101 IPR019787 -
Pste8g00086 690 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 513 645 IPR013083 -
Pste8g00086 690 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 224 IPR013083 -
Pste8g00086 690 SMART ring_2 159 197 IPR001841 -
Pste8g00086 690 SMART ring_2 53 98 IPR001841 -
Pste8g00086 690 SMART ring_2 555 612 IPR001841 -
Pste8g00086 690 MobiDBLite consensus disorder prediction 642 690 - -
Pste8g00086 690 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 31 650 IPR045134 -
Pste8g00086 690 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 111 IPR013083 -
Pste8g00086 690 CDD RING-HC_ORTHRUS_rpt1 157 202 IPR047498 -
Pste8g00086 690 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00086 Pste-Chr8 524983 528200 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00086 45 645 C2H2 Transcription Factor Family AT5G39550 57.236 0.0 709