LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste8g00076	GCAAGAACGTCCCTTCTAACCTCTTCCCTCCTTCTTTGGTCTCTACACTACACTGTACGCTTGCCTTGTTCTCTCTCGATTTATCTTCACTCCATTCTCTACTTCTACAACAACTCTTACACCAAACACACACCCTTTCTATATTTCAACCCATCCTTCTCCACTCTCCACCATCTCCACCATGAACCAATAACTACAACACAACCTCGTACGTTGTTCTTTCTGACACACACAAACGAAAACACAAACACAAACACAAACACAAACACACTCTTAGTGTTTTTGTTTGTTATGGCATACCATAACCTCTCGCAAGACCTCCCACTCCACCATTTCCCGAACCAAGCCATATTACCCGAACAACAGCAGCAACAGCAACTAGCTTCGTCACCCGACCCTACCTCCAAACCTCACTCCGATCCACATCCTCTCCAAACCTCGCCCAATTGGTTAAACGACGCGCTCCTCCGCACTCACTACACCGACACCACAGACAACAACGACACCTCGAACACCAACAACAACAATAATAACGTTGTCAACGGTTCCAATTTCCTGAACCTAAACCCCGCCGCCTCCGACGCACAGTGGCTCTCCCGGCCGGTCCTCCACCGCCACCCCGGCGAGGTCATCGACGCCGCCGCCGCCGCCGCCGAGCCCCTCGTCGAGCCCGCCGATTTGAAAGTCGACGCCGTCAACTGGCAGATTGGGCGATGGAAGGCGGAGATTCTCGCTCATCCGCTCTACGAACAGCTCCTCTCCGCTCACGTCGCGTGCCTCCGGATCGCCACGCCTGTCGACCAGCTTCCTAGGATCGACGCGCAGTTGGCGCAGTCGCAGAATGTCGTCGCCAAATACGCCGCCTTCGGACACAACAACATCTCGCACTATGTTTTGTTACTCTGCTCCTTCAAAGAACAATTGCAACAGCATGTCCGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATAGAACAATCCTTGCAGAGTTTAACAGGAGTTTCACCTGGAGAAGGTACAGGGGCAACAATGTCTGATGATGAAGATGAACAAGTAGATAGTGATGCCAATCTCTTTGATAGTAGTTTGGATGGGGCAGATAGCATGGGATTTGGCCCTCTTGTTCCTACAGAGAGTGAGAGGTCCCTCATGGAGCGTGTAAGACAAGAATTGAAGCATGAACTGAAACAGGGTTATAAGGAGAAAATTGTTGACATAAGAGAGGAAATTTTGCGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACAACCTCTGTTCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACCGAGGAGGATAAGGCAAGGTTGGTTCAGGAAACTGGATTGCAATTAAAGCAGATTAATAATTGGTTTATCAATCAAAGAAAGAGGAATTGGCACAGCAATCCTTCAACTTCTACTGTCTTGAAGAGCAAGCGTAAAAGGTGATAACTGTTGATCGCTGCATGTAAAAAATGGAGCAAAAGACAAAAACCAAAGCATGAATGTACTCTGTCAACTCTTTTCTCCTTTGATCAATCATGTTGCACAAGAAGGGATTCATAGGAAGACAATGAGAAAGAATCACATTTTGTTTCTGCTGATGGGCCAGGGTTAAAGCAGACATAATGGAGCCAATATTGGTGAACCATTTTACTCATGCTTAATTAAAGGCCTGCAAATAGTTTATAGTACTTGTGATGCTACATAATTAGGAAGTTGAACTAGGAATTATATACCAACAGAGAATTATGATTTTTGTTCATGTTGTATTGCTTTGTGAAATATAATATAATAGTATAATAGCTAGGGGTTAATGGGTGTACAGTAACAAGCTGTGCATTTTTCCTTACCATCATACTCATGTTTTTGTTTTTGTTTATGTTCTTGTTCTTTCAATTGGTATTTGGAGTGTAGAGATTAATTTGTTGTAGAAATATGGTACTGTATAAGATTTTACTTATCAAAGTTGATATTTGGGATGTAGTATAATTTGAATAATCAATGTCATGTGCTTCATGTCGT	2046	0.4472	ARTSLLTSSLLLWSLHYTVRLPCSLSIYLHSILYFYNNSYTKHTPFLYFNPSFSTLHHLHHEPITTTQPRTLFFLTHTNENTNTNTNTNTLLVFLFVMAYHNLSQDLPLHHFPNQAILPEQQQQQQLASSPDPTSKPHSDPHPLQTSPNWLNDALLRTHYTDTTDNNDTSNTNNNNNNVVNGSNFLNLNPAASDAQWLSRPVLHRHPGEVIDAAAAAAEPLVEPADLKVDAVNWQIGRWKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYAAFGHNNISHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDEQVDSDANLFDSSLDGADSMGFGPLVPTESERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKR	489

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste8g00076	489	Gene3D	-	411	483	-	-
	Pste8g00076	489	MobiDBLite	consensus disorder prediction	121	149	-	-
	Pste8g00076	489	ProSiteProfiles	ELK domain profile.	392	412	IPR005539	GO:0003677
	Pste8g00076	489	Pfam	Homeobox KN domain	432	471	IPR008422	GO:0003677\|GO:0006355
	Pste8g00076	489	SMART	KNOX1_2	237	281	IPR005540	GO:0003677\|GO:0005634
	Pste8g00076	489	CDD	homeodomain	415	476	IPR001356	GO:0003677
	Pste8g00076	489	ProSiteProfiles	'Homeobox' domain profile.	412	475	IPR001356	GO:0003677
	Pste8g00076	489	Pfam	KNOX2 domain	295	334	IPR005541	GO:0003677\|GO:0005634
	Pste8g00076	489	SMART	HOX_1	414	479	IPR001356	GO:0003677
	Pste8g00076	489	Pfam	KNOX1 domain	240	280	IPR005540	GO:0003677\|GO:0005634
	Pste8g00076	489	MobiDBLite	consensus disorder prediction	161	183	-	-
	Pste8g00076	489	Pfam	ELK domain	392	413	IPR005539	GO:0003677
	Pste8g00076	489	FunFam	homeobox protein knotted-1-like 3 isoform X1	413	474	-	-
	Pste8g00076	489	SUPERFAMILY	Homeodomain-like	414	477	IPR009057	-
	Pste8g00076	489	SMART	KNOX2_2	290	335	IPR005541	GO:0003677\|GO:0005634
	Pste8g00076	489	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	135	474	-	-
	Pste8g00076	489	SMART	ELK_2	392	413	IPR005539	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste8g00076	Pste-Chr8	455805	461708	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste8g00076	98	489	Homeobox Transcription Factor Family	AT5G25220	60.976	4.57e-171	486

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-KNOX	Pste8g00076		KNOX1	2.9e-18	No_clan