Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00072 AGGAAGGAAAGAGAAAAAACGTAGAATGGGGAATCGTGGGAGAAGTGGAAGGATCATAAATTGGCAGACATGTACCGGAAATGAAAAGGGTGACAAGGCCTCCCGGATTCCTCAGTCCAGACGACCTAATCTATCCTCACTGCAAATACCAGCATGGTCACTAGAGATTGCATTATCTACTTTTGCAAAGACTGATGGTCCTTCAGTTTCGCAATCAAATCCTGGTTCCACAAGAGGACTTCCCCCAATGCCAAATTCAGCAAAAGTCAGATCTTCAATGAGAAATTTACTTCCTCAGAGGACCTTCAAGACAAACAGTTGTTCCCAAGATATTGAAAGGACAGGTCTCATAGTTCCTAATACTCCCTCATCAGATGCCCCTTTGGATAAACCTTCTACTTCGACCCATCCGTCTCTTAATAACAAGGTCGTATCCCCGTCAATAAAAGTTGCACATTCATTACCGGTTACTCCATTTGAAACATCTGCAGCAAAAAATGTACATGGGAGACATCTACAGTGTGATTCTGGTTCTAATACAATGGAAGTTCACCAACATATGACTCGATCATTTTCAGTCCCAGTAAATGGCAAAGCAACTAATTTCAGGGTGACAGATTATAAGGGCTTGATTCGTGTAATTTCGGCAAAACCACTTCTTGAAATTGTTCATGGAAACTCTACTAATGGTGCTTTGGTTCCAGAGATTGCCATTGAAGATGCTACTGAGGATATTCCAGAGGAACAAGCAGTTTGTAGGATTTGTTTTGGGGAGCTTGGAGAAGGAGGGAATACACTTAAGATGGAATGCAGTTGTAAAGGTGATCTTGCACTTTCTCACCAAGAATGTGCAGTAAAGTGGTTTAGTATTAAGGGAAACAGGACCTGTGATGTCTGTAAGCAGGATGTCCGAAACCTTCCAGTAACACTTTTGAAAATTTATAATCCTCAAAGTACTGCTAGGCAGGCATCAAATGTGCCACAACAGACAGAAATGGTTTATTACAGGATCTGGCGGGATGTACCAGTACTTATCTTGGTCAGCATGCTTGCTTACTTTTGTTTCCTAGAACAACTGCTGGTTTCAGATTTGGGTCCTCGCGCTCTTGCCATTTCATTACCTTTCTCTTGTGTTTTAGGTCTCCTTTCTTCTATGATTGCGTCAACCATGGTGAGCAGGAGTTTCGTATGGGCTTATGCTTGCTTTCAATTTGCAATTCTTATCTTGTTAGCTCACATATTTTATACTATTCTCAATTTTAATGCAATTCTTTCCATTCTCGTTTCCTCTTTCACGGGATTTGGGATTGCCATCAGTATGAATTCTCTCGTTATGGAATTTATTGGATGGAGAACTAGTAGGCGGATTCAATCCTCCATTGAGAATGCCAACAGGACAGGCCAACAGCGTCGTGAGCATGTACAACAACCGAGACAGGAAGATTGATTGACGACAACATCAATGACAAAGACAACAACAGCATCATATGCCGCAGCATGACAACAGTGTATGCAACTAGTTCAGGCCAGTCTTCCCCGATTATGAAGAATTTTGTTCTTTTTTAACTTAATTTTTTTTCTGCAAACATGAGGATTTCCAATTGTAGGTGTGAACCAAGATATTTGAACAGATTGTTAACATAGTTAAACCTTACTCTCACGTGGATGAAGCATAAGAAATCCTCAGCCCCATCAATACCGACATGAAACTAATGATACCATTCATTATTATTTACCCTTTTGTAGTTATTTCTTACATGAAAAATG 1767 0.4046 MGNRGRSGRIINWQTCTGNEKGDKASRIPQSRRPNLSSLQIPAWSLEIALSTFAKTDGPSVSQSNPGSTRGLPPMPNSAKVRSSMRNLLPQRTFKTNSCSQDIERTGLIVPNTPSSDAPLDKPSTSTHPSLNNKVVSPSIKVAHSLPVTPFETSAAKNVHGRHLQCDSGSNTMEVHQHMTRSFSVPVNGKATNFRVTDYKGLIRVISAKPLLEIVHGNSTNGALVPEIAIEDATEDIPEEQAVCRICFGELGEGGNTLKMECSCKGDLALSHQECAVKWFSIKGNRTCDVCKQDVRNLPVTLLKIYNPQSTARQASNVPQQTEMVYYRIWRDVPVLILVSMLAYFCFLEQLLVSDLGPRALAISLPFSCVLGLLSSMIASTMVSRSFVWAYACFQFAILILLAHIFYTILNFNAILSILVSSFTGFGIAISMNSLVMEFIGWRTSRRIQSSIENANRTGQQRREHVQQPRQED 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00072 473 ProSiteProfiles Zinc finger RING-CH-type profile. 236 298 IPR011016 GO:0008270
Pste8g00072 473 PANTHER OS02G0165000 PROTEIN 25 460 - -
Pste8g00072 473 MobiDBLite consensus disorder prediction 56 80 - -
Pste8g00072 473 SUPERFAMILY RING/U-box 240 295 - -
Pste8g00072 473 SMART ringv_2 243 292 IPR011016 GO:0008270
Pste8g00072 473 MobiDBLite consensus disorder prediction 453 473 - -
Pste8g00072 473 Pfam RING-variant domain 244 291 IPR011016 GO:0008270
Pste8g00072 473 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 229 299 IPR013083 -
Pste8g00072 473 MobiDBLite consensus disorder prediction 56 72 - -
Pste8g00072 473 CDD RING_CH-C4HC3_MARCH 244 292 - -
Pste8g00072 473 MobiDBLite consensus disorder prediction 458 473 - -
Pste8g00072 473 MobiDBLite consensus disorder prediction 108 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00072 Pste-Chr8 441439 447207 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00072 227 298 C3H Transcription Factor Family AT2G37950 46.575 6.70e-14 68.9