Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00055 AAATAGCGTTCTTCTTAATTTCTACAATCTAGATACACCACAGTCCTTTCTCCACCCATCTAGAAACCACATATATAATCTTAAAGCTGAAGGCTGAAGGCTGAAGGCTGAAGGCTGAAGGCTGAAGGTGAGTGAGTCTTGACTCTCTTGGTAATTAAAAGATAATGAGTTATTAGTGATGTTATGTAATGTAAAAGTATAGGATGGTGATGGAATATGGGGCGTTGGTGCAAAGTTGTGGTTTGGCAGAAGAAGATTTGATTGAGGAAGTGCTGGCAGAAGGTTGCTGGGTGGAGACGGAGGTGGGTAAGAGATGGTGGATTGGACCCAAGGCTAATACGGAGCCATCTTCCTCCGTGAAAGACAGATTAGTGATTGCCGTGGGCTACTTGAGAGAATACACTAAGAACCGCAACGTGGTGATTCAGATATGGGTTCCACTAGGAACAGGAACAGGAACAGGGTGTGACGTGGAATGTGTTTTTCCGATGAACCTGAACCCCAACCCAACCCTAAATTACTCCAACGTAAACCTTCGTTTCTTTAGATCCGATGAATACCCACATGTTCCTAATTATGACGTCCCCGGTTCTTTAGCCCTTCCCGTCTTCCAAAGAGGCACTGCCACTTGCCTGGGTGTGATCCAGATGAGCCAGATGGAGAATAATATTGTCTCGAATGCGTTCCTCCAGCTCCAGGGTGTTGATGTGAGGAGTTGTGAGGAGGTGTATGAAGCAGCGGTGAATGAGATGGCAGAGGTGTTAACGTGTGTGTGCAAAACGCAGAATCTGCCTTTGGGTCTGACATGGGGAGCTTGCATGGAGGGGAGGTGTGGGTACGGAGATGGACATTGGAGGGAGAATTACGTGTCGATTGTGGAAAGAGCGTGTTTCGTGGGGGATTCCAACATGTTGGGGTTCCAGGAGGCTTGCTCTCAGCATCACCTTATCAAGGGACAAGGAATCGTTGGCACGGCCTTCATCACCGCCAAGCCCTGTTTTGCTGTGGATGTAACCGGCTTCAACAGAGCCGAATATCCTCTGGCTCACCACGCCAACCTCTTTGGCTTGCATGCTGCCGTCGCCATTCCTCTCTTCATCACCCATTTTCTTTTCGTTTTCGAGTTTTTCCTTCCAAAGGACTGCCTTCACAGGGAACAACACACCCTCTTGCTCAACTCCCTATCCTTCATCCTTCAGCAAGCCTGCCGGACCGGCACCGGAACCCTGCATCTTGTCATGGATATGGACATGGACATGGACATGGACATGGACCAGGACCAGGACCATGATCCATTCACCACCTTCCCCTCTCACCACATTAACAACACCAACAAAGAGGAGATTATTAATCAGACCCAGGTTGAAGCATGTGGATCGTGGATAGCGCATATGATGGCTCAACAGAAACAGAAACAGAAACAGAAGGGAAAAGGTGTATGCGTGTCCTTGGAAGATGTAGAGCAGGCGGCTAATTCGAAAGAGGAGTTCAAAGTGACAAGGTGCAACTGGGAGGGTGGGAGCACTAGTTATGAGGATGATTTCGGGGAAGAATCTCAGACTCACACATACACATTTGGTGGTCGCCGTGGCAGAAAGTCAGGCGAGAAGAGACGAACCAAGGCGGAGAAGACAATCAGCTTGGCAGTTCTGAGACAGTACTTTGCAGGAAGCCTGAAAGATGCTGCAAAGAGCATTGGAGTGTGTCCCACAACTCTGAAAAGGATATGCAGACAGCATGGGATAACGAGGTGGCCATCGAGGAAAATAAAGAAAGTAGGGCACTCTTTAAAGAAGCTTCAGCTTGTGATCGATTCGGTGCAGGGTGCGGAGGGTGCCATACAGATCGGCTCATTCTATTCCAGTTTTCCGGAGTTGTGCTCTGCCTCTGCCTCTGCCTCTGTCTCTGTCTCTGTCTCTGCCCCTTCTCAATCTCAATCTCAATCTCAATCTCAATCTCAATCATCCGCATCTGTTGTCAACACTCCTTTTCGCGTCAAAGCTACTTTTGCTGATGAAAAAATACGTTTTAGCTTGCAACCACATTGGGGGTTCAGGGAATTGCAGCTTGAGATAGCAAGGCGTTTCAATCTAAACCAGGTGGCCACCAATAACGTTGTTCTCAAGTATTTGGATGACGAAGGGGAATGGGTTGTTTTAGCCTGCGATGCTGATCTCCAGGAGTGTAACGATTTGCACACTACTTCTCAGACCCGCACAATTCGACTCGCCCTATTTCAAGCTTCACCTTTAAATACTTTCACCCCTTCTTAAATCTTAATCTTAACTTCTTCTTCAACACCTCTCTCTGTATTCCCCAACATTCTTCAATGTCTA 2336 0.4769 MVMEYGALVQSCGLAEEDLIEEVLAEGCWVETEVGKRWWIGPKANTEPSSSVKDRLVIAVGYLREYTKNRNVVIQIWVPLGTGTGTGCDVECVFPMNLNPNPTLNYSNVNLRFFRSDEYPHVPNYDVPGSLALPVFQRGTATCLGVIQMSQMENNIVSNAFLQLQGVDVRSCEEVYEAAVNEMAEVLTCVCKTQNLPLGLTWGACMEGRCGYGDGHWRENYVSIVERACFVGDSNMLGFQEACSQHHLIKGQGIVGTAFITAKPCFAVDVTGFNRAEYPLAHHANLFGLHAAVAIPLFITHFLFVFEFFLPKDCLHREQHTLLLNSLSFILQQACRTGTGTLHLVMDMDMDMDMDMDQDQDHDPFTTFPSHHINNTNKEEIINQTQVEACGSWIAHMMAQQKQKQKQKGKGVCVSLEDVEQAANSKEEFKVTRCNWEGGSTSYEDDFGEESQTHTYTFGGRRGRKSGEKRRTKAEKTISLAVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIQIGSFYSSFPELCSASASASVSVSVSAPSQSQSQSQSQSQSSASVVNTPFRVKATFADEKIRFSLQPHWGFRELQLEIARRFNLNQVATNNVVLKYLDDEGEWVVLACDADLQECNDLHTTSQTRTIRLALFQASPLNTFTPS 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00055 689 Gene3D - 592 682 - -
Pste8g00055 689 CDD PB1_NLP 596 679 IPR034891 -
Pste8g00055 689 ProSiteProfiles PB1 domain profile. 595 680 IPR000270 GO:0005515
Pste8g00055 689 SMART PB1_new 595 680 IPR000270 GO:0005515
Pste8g00055 689 Pfam RWP-RK domain 477 525 IPR003035 -
Pste8g00055 689 SUPERFAMILY CAD & PB1 domains 585 682 - -
Pste8g00055 689 ProSiteProfiles RWP-RK domain profile. 464 545 IPR003035 -
Pste8g00055 689 PANTHER PROTEIN NLP8 108 677 IPR045012 GO:0003700
Pste8g00055 689 Pfam PB1 domain 595 679 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00055 Pste-Chr8 307131 309627 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00055 597 681 NLP Transcription Factor Family AT4G35270 57.647 8.79e-26 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Pste8g00055 PB1 4.3e-15 CL0072