Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00049 TAAAATTCGAGAATCATCATCGACCTTTCCCACCGCCATAGAAGAACAGGAACAGAAGCTCATAGAAGAATAAGAAAAAGGGTGTCCCAAAGTGTGTTGATTGAACATAAAAATTTGAACTTTGAACAGTTCTTAAAGAAAGCAAATGGGTCATTTATCAGAGTCGAAGTTGGTTCAAGAGTTGGTTCTGTACGCAGCTAGCGCAGCACTGAGTTGCTTGGTCCTGTTCGTGGGTCTCCGACAGCTCGACCCCAATCGCGAGGCCTCAAAAAAAGCGCTTCACCAAAAAAAAGAGATTGCCAAACGCCTCGGTCGTCCCCTCGTCCAAACAAACCCTTATGAGGATGTCATAGCATGTGATGTTATTAATCCAGACCACATTGATGTGGAGTTTAACTCTATTGGGGGACTGGAAACTATAAAGCAAGCTCTGTTTGAGCTTGTTATTCTGCCTCTAAAGAGACCCGACTTGTTTTCTCATGGTAAGCTTCTTGGGCCACAAAAAGGTGTCCTGTTGTATGGACCACCTGGCACAGGAAAAACCATGCTTGCCAAAGCTATTGCGAAGGAGTCTGGTGCAGTTTTCATTAATGTGAGGATATCAAACCTGATGAGCAAGTGGTTTGGAGATGCCCAGAAACTTGTGGCTGCTGTATTTAGCCTAGCTCATAAGCTCCAGCCTGCCATCATATTCATTGATGAAGTTGACAGCTTTTTGGGTCAGCGTCGTACAACAGATCACGAGGCTTTGTTGAATATGAAAACTGAATTCATGGCTTTATGGGATGGCTTTACCACTGATCAGAATGCTCAGGTTATGGTCCTTGCTGCCACTAATCGTCCTTCAGAACTTGATGAAGCAATACTTCGACGTCTTCCTCAAGCATTTGAAATTGGTATCCCTGATCGAAGAGAGAGGGCTGACATATTGAAGGTTATCTTGAAGGGTGAGAGGGTTGAAGAAAACATTGACTTTGATCATATAGCTTACTTAAGTGAAGGTTACACTGGTTCGGATCTTTTTGACCTTTGCAAGAAGGCTGCCTATTTTCCAATTAGAGAACTGCTGGATGAAGAGAAGAAAGGAAGAAGTTCCTCTGCTCCTAGACCATTGTCCCAGTTAGACTTTGAGAAGGCCCTTGCCACTTCACAGAAGACTACAGTTGCAGCATCTGAATACAACGGATTAAGTGCAGATGCTCTAAGATGGACAGGGCACAGGGAACCAGGTGAATATGAGGTTCAAGCTGCAATCAGTGAACTCTCTAAGTTTGTGGTTTCTCACATGATTAACCGCCAGCCAGAGACCAAAGATCCTTAAAAATGCTTAACTTTCACATTTTCTTTAGAGCGTTCTCTTATTGTCATCTAGCTTAGTACAGCTTGTGAAAGCACCAATCTCATTGTTATACTAATGCTGTAACATGTTAATACACATGTTTAGGTGGCATGCTATTGCATTTTGTTGACTCTTTGATGCAATGATCCTCTGTAGATCGCCATTTAATATTCCTTTTGAGAAAAAATT 1528 0.4247 MGHLSESKLVQELVLYAASAALSCLVLFVGLRQLDPNREASKKALHQKKEIAKRLGRPLVQTNPYEDVIACDVINPDHIDVEFNSIGGLETIKQALFELVILPLKRPDLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAHKLQPAIIFIDEVDSFLGQRRTTDHEALLNMKTEFMALWDGFTTDQNAQVMVLAATNRPSELDEAILRRLPQAFEIGIPDRRERADILKVILKGERVEENIDFDHIAYLSEGYTGSDLFDLCKKAAYFPIRELLDEEKKGRSSSAPRPLSQLDFEKALATSQKTTVAASEYNGLSADALRWTGHREPGEYEVQAAISELSKFVVSHMINRQPETKDP 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00049 391 Gene3D - 253 335 - -
Pste8g00049 391 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 310 IPR027417 -
Pste8g00049 391 ProSitePatterns AAA-protein family signature. 224 243 IPR003960 GO:0005524|GO:0016887
Pste8g00049 391 Gene3D - 80 339 IPR027417 -
Pste8g00049 391 FunFam ATPase family AAA domain-containing protein 1 80 257 - -
Pste8g00049 391 CDD RecA-like_ATAD1 85 250 - -
Pste8g00049 391 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 8 344 - -
Pste8g00049 391 SMART AAA_5 118 254 IPR003593 GO:0016887
Pste8g00049 391 Pfam AAA+ lid domain 274 310 IPR041569 -
Pste8g00049 391 Pfam ATPase family associated with various cellular activities (AAA) 122 251 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00049 Pste-Chr8 264655 271426 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00049 39 325 Calmodulin-binding Proteins AT3G56690 33.677 4.24e-40 150