Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00036 GCTACTGCAAGGGTCTCAGCTAAATTTTGGCAACCAAAGGATGCACCACAATTTATGGTCAATGATCTTCCAATACTCAGACGTGGAAACCCAGTTTCAACTTTTGATATATCCAAAATGGATGGATATATCATTTCAACATCTGGGGGAATGGTCACTTTGTTCAATATGGTAACATTTAAGTTAATGTATGTCTCAAATTTCCTAATGCAGACTCTGAGAACTTTCTGGTCTCCACCACCTATGGCAACATGTGTTGTCTTCTACCCTAAAGATAACAATATATTTGGTGTTGGCGTTGATGACTCCACTATACTTATATACCATGTTCGCGATGAAAAGGTTCTACAAAAGCTTGAGGGTCACTCTAAAAGAGTTACAGCTCTTGCCTTCTCAAATAGTTCGGATGTTCTTATATCTGCTGATTCAAATGGTCTGATTATTCTGTGGAATACAAATAGGTGGGACAAGTTGAAAGATAAGCAATTGCAAATACATGGAAACCAGGTTCCAGAATCTGAAACTCAAATTCAGTTTCACCCTGATCAAATACACTTCCTTGTTGCTCATATCAGTCATCTTGCAATATATGAGACAACAGAACTAAGATGTGTCAACCAGTGGATTCCAGAATCTCCACTGCTCATGATCACTCAAGCAGCTTTCTCATGTGATGGTCACACTGTGTATTCCATTCTTGTTGATGGGACTGTGGCAATTTTTTATGCCCCAAATCTTCAAATTCGTTGTCGTATCTATCCCTCTACTTATCTTTCTCCAATCTCAAGATTGGGCATCTTCCCAATTTCTGTAGCTGCACATCCCCAGAAACCAAGCCAGTTTGTTGTAGGGTTATCAGATGGAAGTGCTTACGTCTTCGAGCCAAGGGAACCAGGAGCTACTTGGATCAAAGCCATTGAGACACCTAATTAA 933 0.3987 ATARVSAKFWQPKDAPQFMVNDLPILRRGNPVSTFDISKMDGYIISTSGGMVTLFNMVTFKLMYVSNFLMQTLRTFWSPPPMATCVVFYPKDNNIFGVGVDDSTILIYHVRDEKVLQKLEGHSKRVTALAFSNSSDVLISADSNGLIILWNTNRWDKLKDKQLQIHGNQVPESETQIQFHPDQIHFLVAHISHLAIYETTELRCVNQWIPESPLLMITQAAFSCDGHTVYSILVDGTVAIFYAPNLQIRCRIYPSTYLSPISRLGIFPISVAAHPQKPSQFVVGLSDGSAYVFEPREPGATWIKAIETPN 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00036 310 SMART WD40_4 112 151 IPR001680 GO:0005515
Pste8g00036 310 SMART WD40_4 260 294 IPR001680 GO:0005515
Pste8g00036 310 SMART WD40_4 201 242 IPR001680 GO:0005515
Pste8g00036 310 SMART WD40_4 69 109 IPR001680 GO:0005515
Pste8g00036 310 SMART WD40_4 19 56 IPR001680 GO:0005515
Pste8g00036 310 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 304 IPR027728 GO:0006355
Pste8g00036 310 ProSiteProfiles Trp-Asp (WD) repeats profile. 119 160 IPR001680 GO:0005515
Pste8g00036 310 Gene3D - 8 301 IPR015943 GO:0005515
Pste8g00036 310 SUPERFAMILY WD40 repeat-like 27 296 IPR036322 GO:0005515
Pste8g00036 310 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 119 151 - -
Pste8g00036 310 Pfam WD domain, G-beta repeat 114 151 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00036 Pste-Chr8 173449 180979 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00036 80 226 U-box Gene Family AT2G33340 24.832 1.83e-07 50.4