Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00033 CTACAATCTCTTCAACCACACAAACACTCATTTTCATTAAAACCATTTAGTAATTCTAGTGCTAGTTTTTTCCTACCTTTGTTGGTTAAACGTACACATATAATCATGCAGGTTTCCTTCTCGATGAATCTGGCATGCCTTGCATTAACATTGATCCTACTACATGGAGCAAGAGAAGGAGCTTGCAGACATGATGATGATGTCGTCAAAATCGGAGCCATATTCACATTAAAAACCATAAACGGACAAGTTTCAAAAATTGCGATCCAAGCTGCTGAGAAGGATGTGAATTCCGATCCTCGCATTCTCGGGGGACGTAAATTGTCCATAAACATCTATGATTCCAATTTCAGCAGTTTCCTTAGCTTTATTGGAGCCCTCAAGTTCTTGATGACGGACACAGTAGCTATAATTGGTCCTCAAAGTTCAGTAATGGCCCATGTGCTTTCGCATCTTGCAAATGAGCTCCATGTTCCCCTACTGTCCTTCACGGCTCTGGATCCCACCCTAACACCTCTTCAGTATCCTTATTTTCTCCAAACTGCACCCAGCGATCAGTTCCAGATGACTGCAGTTGCCGACATGATTAGTTATTTTGGTTGGCAAGACGTCGTAGCAGTTTTCAGTGATGATGATCCGAGTCGAAACGGAATCACTGTTTTGGGGGATAAACTTGCAGAGAGACGCTGTAAGTTGTCTTACAAAGCAGCACTGCCCCCTGATGCAACCGCTACTGCAACCCATGTTACTAGTCAGTTACTCAAGATTATGAGTATGGAGTCTCGAGTAATCGTTTTACACACCTTATCCAAAACAGGTCTCTTGGTTTTTGAGCTGGCTCAAAAACTAGGAATGATGAACGAAGGGTATGTCTGGATAGCCTCTACTTGGTTATCAACTGTTTTAGACTCACAACCTTTAGATGCTTCTAACTCAATTCAAGGAGTTCTTACACTTCGCCCTCACACCCCTCCATCCCCAAATAAACAGGCATTTATTTCAAGGTGGAAACACATAAGTAATGGCTCAATTGGGTTAAATCCGTACGGACTCTATGCATACGATTCTGTTTGGATGATTGCTCAGGCACTAAAATTATTTTTTGATCAGAATGGTACCATTTCTTTCTCTAATAATGCAAATTTCAGTGGTACGAGGGAAGAGACTTTGGATTTCGGTGCTTTGAGCGTTTTTGATGGAGGGAAGCAGCTACTTGATAACATATTGCGCATTAACATGACTGGATTGACAGGACCTATTCAATTTGATTCCGATAGATCTCCTCCACATCCATCATATGACATCCTTAACGTAATTGTTACAGGTTATAGGTGCATCGGTTACTGGTCAAATTACTCGGGCCTCTCTGTTATAACACCTGAGAAACTTGGCACAAAGCCTGCCAATCGTTCAATTTCAAGCCAGCATCTAAAGCCTGTCATGTGGCCTGGAAATACAACAGAAAAGCCTCGTGGATGGGTTTTCCCAAATAATGGGAGGCAACTGAGGATTGGAGTTCCCAACAGAGTTAGTTATCGAGACATGGTGTCACAAATAAACGGCACCAATGCAGTACAAGGATATTGCATAGATATATTCCTAGCTGCCATAAAATTGCTTCCATATGCAGTTCAATATAAGTTCATTCTTTTTGGAGATGGACAAAACAACCCAAGCTACTATGATCTTGTAAACATGATTTCTTCCGATGTTTTTGATGCTGCCGTAGGCGACATTGCTATTGTCACTGACCGAACAAAGATTGTGGATTTTACTCAACCATATATAGAGTCGGGGCTAGTTGTGGTTGCACCAGTAAAAAAATTGAAGTCGCATGCTTGGGCTTTCTTGCGACCATTTACTCCACCGATGTGGGGTGTCACTGCATTTTTTTTCCTTTTTGTTGGAGCCGTGGTGTGGATTCTTGAACATCGAACAAACGATGAGTTTCGAGGGCCGCCAAAGGAACAGATAGTTACAGTTCTTTGGTTTAGTTTCTCAACCATGTTCTTTGCGCACAGAGAAAACACAATTAGTCCACTTGGTCGAATTGTATTGATAATCTGGCTATTTGTGGTTCTGATAATCAATTCAAGCTACACTGCAAGCTTGACATCAATTCTCACTGTGCAGCAGCTGTCCTCACCCATAACAGGAATCGACAGCTTGATATCCAGCAGTGAGCGTATAGGGTTCCAAGTAGGCTCATTCGCTGCAAACTATTTGACTGAGCAGCTCAACATCCCCAAACATAGACTTATTCCTCTTGGCTCACCAGAAGAATATGCCGTTGCCCTTGAAAAGGGAACAGTTGCAGCTGTGGTGGACGAACGGCCCTATGTAGAACTATTCCTTTCAAACCACTGCAAATTCTCAATCAGAGGCCAAGAGTTCACCAAAAGTGGATGGGGATTTGCATTCCCAAGGGACTCTCCTTTTGCAGTTGACATGTCAACTGCCATTCTAACTCTATCAGAGAATGGTGAACTTCAGAGGATATATGAAAAGTGGCTTTCAGAAAAGGCTTGCGGTTTGCACAGTGCCGAGGACGAACAGCTTGAATTGAATAGCTTCCGGGGCCTGTTTCTAATATGTGGAATAACATGCTTCCTGGCGCTTCTTATCTACTTTTTATCAATGTTGCACCAATTCAGTAAAAAATCCCCTCAAAAAGCACCTCTTGCTCCTTCTAATCGTTACACCTCAGGTTCTGTATGCCGCATCCAGACATTTCTTCATTTTGCTGACAAAAAAGAAGACGTATCACCGAAGAAGTTGAAAAGAAAACTCCACTATAATTCATCAAATGCTTATTCCAGAGAAAATCGTTCGAGGAGCGTATCTAAGAGAATACAACTCGACATTTCCCAAGAGTCGTCTCCTTGTGATTAAACTAGTCATGCTCAATTGGATATCCCAATTCAAGTTTGAACTCAAAACTTCTATCTGATGCTGTGCAACTTGCTTAGCTTCTGCTCGTGATATATTAATATGACATGATGTTTACTTTTTGCCAGATTTTCCACTCCAAAATTTTAGACTCTTATCATATTTATTATTTTCTTCTCTCTTTATGTGTACTTATGCTAGAACAAATTAGGTGTCCGTAAAACATTTTTCTTATGCTTGACTTGTGGCCGTGTAGTTTCATCTAAATTGGGTTGTCAAAGCCTATTATATAATTTTAGACGAATTCTACGGTGGACAAGTTCCACAGATG 3220 0.4137 MQVSFSMNLACLALTLILLHGAREGACRHDDDVVKIGAIFTLKTINGQVSKIAIQAAEKDVNSDPRILGGRKLSINIYDSNFSSFLSFIGALKFLMTDTVAIIGPQSSVMAHVLSHLANELHVPLLSFTALDPTLTPLQYPYFLQTAPSDQFQMTAVADMISYFGWQDVVAVFSDDDPSRNGITVLGDKLAERRCKLSYKAALPPDATATATHVTSQLLKIMSMESRVIVLHTLSKTGLLVFELAQKLGMMNEGYVWIASTWLSTVLDSQPLDASNSIQGVLTLRPHTPPSPNKQAFISRWKHISNGSIGLNPYGLYAYDSVWMIAQALKLFFDQNGTISFSNNANFSGTREETLDFGALSVFDGGKQLLDNILRINMTGLTGPIQFDSDRSPPHPSYDILNVIVTGYRCIGYWSNYSGLSVITPEKLGTKPANRSISSQHLKPVMWPGNTTEKPRGWVFPNNGRQLRIGVPNRVSYRDMVSQINGTNAVQGYCIDIFLAAIKLLPYAVQYKFILFGDGQNNPSYYDLVNMISSDVFDAAVGDIAIVTDRTKIVDFTQPYIESGLVVVAPVKKLKSHAWAFLRPFTPPMWGVTAFFFLFVGAVVWILEHRTNDEFRGPPKEQIVTVLWFSFSTMFFAHRENTISPLGRIVLIIWLFVVLIINSSYTASLTSILTVQQLSSPITGIDSLISSSERIGFQVGSFAANYLTEQLNIPKHRLIPLGSPEEYAVALEKGTVAAVVDERPYVELFLSNHCKFSIRGQEFTKSGWGFAFPRDSPFAVDMSTAILTLSENGELQRIYEKWLSEKACGLHSAEDEQLELNSFRGLFLICGITCFLALLIYFLSMLHQFSKKSPQKAPLAPSNRYTSGSVCRIQTFLHFADKKEDVSPKKLKRKLHYNSSNAYSRENRSRSVSKRIQLDISQESSPCD 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00033 928 SUPERFAMILY Periplasmic binding protein-like II 445 805 - -
Pste8g00033 928 Pfam Ligand-gated ion channel 805 833 IPR001320 GO:0015276|GO:0016020
Pste8g00033 928 Gene3D - 149 420 - -
Pste8g00033 928 Pfam Bacterial extracellular solute-binding proteins, family 3 485 804 IPR001638 -
Pste8g00033 928 MobiDBLite consensus disorder prediction 914 928 - -
Pste8g00033 928 CDD PBP1_GABAb_receptor_plant 35 422 IPR044440 -
Pste8g00033 928 PIRSF IGluLR_plant 3 926 IPR017103 -
Pste8g00033 928 Gene3D - 767 802 - -
Pste8g00033 928 CDD GluR_Plant 465 803 - -
Pste8g00033 928 Gene3D - 732 766 - -
Pste8g00033 928 MobiDBLite consensus disorder prediction 897 928 - -
Pste8g00033 928 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 34 882 IPR015683 -
Pste8g00033 928 SMART AABind_6 466 806 IPR001638 -
Pste8g00033 928 Gene3D - 578 712 - -
Pste8g00033 928 SMART GluR_14 468 805 IPR001320 GO:0015276|GO:0016020
Pste8g00033 928 Pfam Receptor family ligand binding region 52 404 IPR001828 -
Pste8g00033 928 Gene3D - 52 395 - -
Pste8g00033 928 SUPERFAMILY Periplasmic binding protein-like I 31 459 IPR028082 -
Pste8g00033 928 Gene3D - 452 577 - -
Pste8g00033 928 FunFam Glutamate receptor 149 306 - -
Pste8g00033 928 FunFam Glutamate receptor 704 807 - -
Pste8g00033 928 FunFam Glutamate receptor 462 578 - -
Pste8g00033 928 FunFam Glutamate receptor 578 708 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00033 Pste-Chr8 159544 163245 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00033 6 915 Ion Channels AT2G17260 60.195 0.0 1138