Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00030 ATGGGCAACACATGCCGCGGATCTTTGAAAGGAAAAAATATTCAGGGCTTCAGCCAGCCCGAAGACCACTCCAAGCGCACCACCATCCATTCTGATCCCTCCGACTCAACCAAACACAATCTCAATTCTCCAGCTGAAAACAACAACATCAGCAGCAACAACAACAACAATAATCCTCCCTTCTCCAAGAAAGACGTCATCATGCGCCGAGGCCTCGACAACCAGGCTTATTATGTCTTGGGCCATAAGACTCCCAACATTCGTGATCTATACACTCTTGGCCGTAAATTGGGACAGGGCCAATTTGGCACTACCTATTTATGCACCGAGAATTCTTCCTCCATTGAATACGCCTGCAAATCCATCTCCAAAAGGAAGTTGATTTCCAAGGAGGACGTCGAGGACGTTAGGAGGGAAATTCAGATAATGCATCATTTAGCTGGTCACAAGAACATTGTCACCATCAAGGGTGCTTACGAGGATCCACTCTATGTTCATATTGTCATGGAGCTTTGTTCTGGGGGTGAGTTGTTTGATCGCATCATCCAGAGGGGTCACTATACCGAGAGGAAGGCTGCAGAATTGACCAAAATTATTGTCGGGGTTGTCGAGGCTTGCCATTCCCTTGGCGTTATGCATAGAGATCTCAAACCTGAAAACTTTTTGTTGGTCAATAAAGATGATGATTTCTCTCTCAAAGCAATTGACTTTGGCCTCTCCGTTTTCTTCAAACCCGGTCAAGTTTTCACTGATGTAGTTGGCAGCCCCTACTATGTTGCTCCTGAAGTTCTCCTCAAGCATTATGGGCCTGAAGCAGATGTGTGGACAGCGGGTGTCATACTGTACATATTGCTTAGTGGTGTGCCACCGTTTTGGGCAGAGACCCAGCAGGGTATATTTGATGCAGTTTTGAAGGGACATATAGATTTTGACTCAGATCCCTGGCCTCTAATATCTGACAGTGGAAAAGATCTGATTAGAAAGATGCTCTGTTCTCAGCCTTCAGAACGGTTGACTGCTCATCAAGTCTTATGTCATCCTTGGATATGTGAAAATGGAGTTGCCCCTGACAGGTCACTGGACCCTGCTGTTCTTTCTCGTCTCAAACAGTTTTCTGCCATGAATAAGCTAAAGAAGATGGCGCTGCGGGTGATTGCTGAAAGTCTATCTGAAGAGGAGATTGCTGGTTTGAGAGAAATGTTTCAGGCTATGGATACTGATAACAGTGGTGCAATCACTTTTGATGAACTCAAAGCTGGTCTAAGAAGATATGGGTCTACCCTTAAGGATATAGAAATACGCGATCTTATGGAAGCGGTAGGTTGTTGGTTCTACAAAAAGTTTCTTTTCATATTTCGTGCTGATGTGGACAAAAGTGGAACCATAGATTATGGGGAGTTTATTGCTGCAACAGTTCATCTCAACAAACTAGAGCGTGAAGAACATCTTATTGCAGCTTTCCAATATTTCGACAAGGATGGTAGTGGTTATATTACAGTTGATGAACTTCAACAAGCTTGTGCAGAACATAACATGACTGATGCTTTTCTTGAAGATATTATCAGAGAAGTTGATCAAGATAATGATGGAAGGATTGATTATGGTGAGTTTGCTGCCATGATGCAAAAAGGCAACGCTGGAATAGGTAGGAGGACTATGCGCAACAGTCTGAATTTAAGCATGAGAGATGCACCAAGTGCTCAATAG 1707 0.4382 MGNTCRGSLKGKNIQGFSQPEDHSKRTTIHSDPSDSTKHNLNSPAENNNISSNNNNNNPPFSKKDVIMRRGLDNQAYYVLGHKTPNIRDLYTLGRKLGQGQFGTTYLCTENSSSIEYACKSISKRKLISKEDVEDVRREIQIMHHLAGHKNIVTIKGAYEDPLYVHIVMELCSGGELFDRIIQRGHYTERKAAELTKIIVGVVEACHSLGVMHRDLKPENFLLVNKDDDFSLKAIDFGLSVFFKPGQVFTDVVGSPYYVAPEVLLKHYGPEADVWTAGVILYILLSGVPPFWAETQQGIFDAVLKGHIDFDSDPWPLISDSGKDLIRKMLCSQPSERLTAHQVLCHPWICENGVAPDRSLDPAVLSRLKQFSAMNKLKKMALRVIAESLSEEEIAGLREMFQAMDTDNSGAITFDELKAGLRRYGSTLKDIEIRDLMEAVGCWFYKKFLFIFRADVDKSGTIDYGEFIAATVHLNKLEREEHLIAAFQYFDKDGSGYITVDELQQACAEHNMTDAFLEDIIREVDQDNDGRIDYGEFAAMMQKGNAGIGRRTMRNSLNLSMRDAPSAQ 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00030 568 ProSiteProfiles EF-hand calcium-binding domain profile. 392 427 IPR002048 GO:0005509
Pste8g00030 568 SMART efh_1 396 424 IPR002048 GO:0005509
Pste8g00030 568 SMART efh_1 516 544 IPR002048 GO:0005509
Pste8g00030 568 SMART efh_1 447 474 IPR002048 GO:0005509
Pste8g00030 568 SMART efh_1 482 510 IPR002048 GO:0005509
Pste8g00030 568 Pfam EF-hand domain pair 397 471 IPR002048 GO:0005509
Pste8g00030 568 Pfam EF-hand domain pair 481 542 IPR002048 GO:0005509
Pste8g00030 568 SMART serkin_6 91 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste8g00030 568 Gene3D - 359 545 - -
Pste8g00030 568 ProSiteProfiles EF-hand calcium-binding domain profile. 514 547 IPR002048 GO:0005509
Pste8g00030 568 ProSitePatterns EF-hand calcium-binding domain. 525 537 IPR018247 -
Pste8g00030 568 ProSiteProfiles Protein kinase domain profile. 91 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste8g00030 568 ProSitePatterns EF-hand calcium-binding domain. 405 417 IPR018247 -
Pste8g00030 568 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Pste8g00030 568 SUPERFAMILY Protein kinase-like (PK-like) 72 373 IPR011009 -
Pste8g00030 568 FunFam Calcium-dependent protein kinase 1 357 545 - -
Pste8g00030 568 FunFam Calcium-dependent protein kinase 5 177 357 - -
Pste8g00030 568 MobiDBLite consensus disorder prediction 1 64 - -
Pste8g00030 568 ProSitePatterns Protein kinases ATP-binding region signature. 97 120 IPR017441 GO:0005524
Pste8g00030 568 ProSitePatterns EF-hand calcium-binding domain. 455 467 IPR018247 -
Pste8g00030 568 FunFam Calcium-dependent protein kinase 1 93 176 - -
Pste8g00030 568 Pfam Protein kinase domain 91 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste8g00030 568 PANTHER SERINE/THREONINE-PROTEIN KINASE 83 537 - -
Pste8g00030 568 MobiDBLite consensus disorder prediction 1 22 - -
Pste8g00030 568 ProSiteProfiles EF-hand calcium-binding domain profile. 478 513 IPR002048 GO:0005509
Pste8g00030 568 CDD STKc_CAMK 91 348 - -
Pste8g00030 568 MobiDBLite consensus disorder prediction 34 62 - -
Pste8g00030 568 Gene3D Phosphorylase Kinase; domain 1 93 176 - -
Pste8g00030 568 ProSitePatterns EF-hand calcium-binding domain. 491 503 IPR018247 -
Pste8g00030 568 Gene3D Transferase(Phosphotransferase) domain 1 177 358 - -
Pste8g00030 568 SUPERFAMILY EF-hand 373 544 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00030 Pste-Chr8 126038 136951 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00030 1 564 EF-hand Containing Proteins AT2G17290 81.947 0.0 947
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pste8g00030 Pkinase 3.6e-72 CL0016