Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pste7g02458 | GGAACTGATGGGGAAGAGAGTCAGAAAGAAGACTCGAGGTTCTGCCAAGGAGAAGGGTGCTGCCACCCATTTGCCAAAAAAGGCTATTGAATCATCCAACCCTACTGTTGATTCTGTTGATGAGGGGGTGTTGGTTGCAAAAGAAACAAATTATTGTCCTCATCTTGTAAAAGGTGTTAATTTAAATACATTATCCACTAAAATTGGGTCTCCTGGATCCATAAGGTGTGAAGATTGTAGGGAAGGTGCGACTGATAGAAGGAGTGGTAAAGCAAAGGGTAAACATGGAAAAAAGAAAGGCGGTGCATCATTAGATTCAAAATCTGAGTCAAAGTCTATATGGGTTTGTTTAGAGTGTGGTCAATATAACTGTGGAGGTGTGGGGCTACCTATAACCCCTCACTGCCATGTTGTAGGGCATGCAAGGAAAAATCAACACCCTTTGGTGGTTCACTTTGATAAGCCTCAACTTTGTTGGTGCTTTCCTTGCAATATGCTTATTCAAGTGGATAAATTTGAAAAAACTGTTGAATCAAGTCATCTTCTATCTGATGTTGTGAAATTGTTGAAAGGACAATCACAGGAAAAATCTTCAGTGGATGTTGAGGATGTTTCCGCTGGAGATGGCAGTATTAATTCAGAAATTAAGTCAAAAGCTCTGCTCACAAATGATTCCTATGGACTGGGTGGTTATGTAGTTAGAGGTATGATTAATCTTGGAAATACTTGCTTCTTCAATTCAGTAATGCAAAATCTGTTAGCTATGAATAGATTGCGGGACAACTTTCTAAAGTTAGATGCTCCTATTGGCCCACTTATTAGTTCCTTGAAGAAGCTTTTCACCGAAACAAACCCCGAATCAGGGTTGAAAAATGTTATAAATCCTAGATCTTTTTTTGGCTGTGTCTGTTCTAAGTCTCCCCAATTTCGAGGATATCAGCAGCATGACAGTCATGAATTGCTCCGTTGCTTATTGGATGGGTTAAGTACCGAGGAACTAGCTGGAAGGAAACAGAATGGTTCTCCCAAGAGAGATGAGACCTCTTCCAATACCTTAGTTGATGCTTTATTTGGGGGTCAGATATCAAGTACTGTATGTTGCATAGAATGTGGGCATTTCTCAACAGTGTACGAACCTTTCTTAGATCTTTCACTGCCTGTTCCAACTAAGAAACCTCCACTTCGCAAGGCCCAACAAGTAACTCGAACCAAAAAAGCTAAAGTTCCACAAAAAAAAGGTGGAAAGACCCGGGTCAAAGTTAATAGGGATACTGATCCCTTACCTGTTCAAACACTATCAAACCAATTATCCAGCAACAAATCGTCTTGCCCTGATCAATCTGTCATAACAGTTACCGAAGAGATGGGAAATTGTTGTGGTGATTCTACATTATTAGATTCTGATGAAATAAAAACTGCTGCAATTGTAGCAGATAAAGAGAACTTGTCTTCACCTAGTTTGGTTACTGCTGGAGAGTCTCAACATATGCAAGTGCATGACAATGGTGCAATGAAGACGTCGTCCGATGATTTTACATGGTTGGATTATGTGGAAGCCGGAACCATGATAGATGAATGTGATTTCATTTCCCAAAAGGAGGATGCACAAGAGGTACAGGATACTGCTAGCAAAGGTGAATGTTTAAATGAATTCCATGGGCAGGCCACCTGTGAATCTAGTGGTCCTGCATGTCTCCTTAAGGATGATCAATACCTAGGACCCAAATTTTCTTCTGCAAATAGGTGGGAAGATGAGGTTCCATTACAGGTTCAAGGTTCAGAAGTGCTTTTACTTCCATACAAAGAAGAAAGCTCCTCTGCTACTGAAATCATTACAGGAGATGGCGAGGCTTCCTCATCCGTTTTGGGTGGTGGTCAAGAAGAATTGGAGTTTGATGGCTTTGGTGACTTGTTCAATGAACCTGAAGTTGTTGTTGGGCCTGCACCTAGACCATCCTCATGTAGTGAGGTCATGGAAGCTGGTTTTATTATTGGAAGCAATAGTGAGTCTGATCCAGATGAAGTAGATGATACAAATTCTCCTGTCTCTATAGAGAGTTGCTTGGCACATTTTATAAAACCCGAGCTTCTCTCAGATGAAAATGCTTGGCATTGTGAGAACTGCTCAAAAGTCCTCCAACGGCAAAAGATAGAAGAAAAAAAGCAGACAAGAGCTATATCTGATGAAAATGAGACTGGAATTCATGATGAACAATGGCATGCAGGTAACTGTTGTTCTGTTAAAGTCAGAACCATTGGAAATGGAGAGATTAAAAATGACCAAGACGTAGAAGGTTTGGTCTCACATGATAAACATGACACAGAGCTTGAAAACGGTCAAAGAGATGTGCTTAGTTTAATTGTTAGTGAAACGGACGGTCAACCATTTGAAACTAAAGATACACGTAATGGTGAATTACAGTCTTCAAGTTTTCATTATACTTGCGATAAAGAAAGTGGCAGTAATTTAGCTGCTGATTCTTGTATTACTGAAAATGTCCAAAGAAGAGATTCTCTTATGATAGGTAACTATAACAGTGACTCCGACGAGGCTGACTCCGAAAGTGTGAAAGTGAAGAGGGATGCAACCAAGAGGGTCCTCATTTATAAAGCTCCGCCTGTCTTGACCATTCATTTGAAGAGATTCAGCCAAGATGTCCGTGGTCGCCTAAGTAAATTAAATGGCCATGTCAATTTCAGAGAAACAATGGATATTAGACCGTATATTGATCCCAGGTGCATAAATGAAGAGAAGTATGAATATCATTTGGTTGGTTTAGTGGAGCACTCGGGAACTATGAGAGGGGGTCATTATGTTGCCTATGTGAGAGGGGGCCAGAGGAACAATGGGAAGGGTGATAAAGAGCAGGGTTTCACATGGTATCAGGCAAGTGATGCTTATGTGCGTGAAGTTTCTCTTGATGACGTTCTTCGTTGTGAGGCATACATTTTATTCTACGAAAAAATTTGAGTGGAACATCTATTTTACTTAATATTCGAGGTAGATATAGAGGTTTACTAAATTTATGAGAGGAAGGGAGATAGATCATTACGGGTGAGTGTAAAAGCAATTACCGTATATTGTATACCATTTTTTGGACATTTGTTGAGATTTTGAATGTACAATGCGATGTCATACAGGCAAAAGTCAATTTTCTTTTGGTGCTGACTGTCAAAGCAAATTTCAGCTATTGAG | 3196 | 0.4011 | MGKRVRKKTRGSAKEKGAATHLPKKAIESSNPTVDSVDEGVLVAKETNYCPHLVKGVNLNTLSTKIGSPGSIRCEDCREGATDRRSGKAKGKHGKKKGGASLDSKSESKSIWVCLECGQYNCGGVGLPITPHCHVVGHARKNQHPLVVHFDKPQLCWCFPCNMLIQVDKFEKTVESSHLLSDVVKLLKGQSQEKSSVDVEDVSAGDGSINSEIKSKALLTNDSYGLGGYVVRGMINLGNTCFFNSVMQNLLAMNRLRDNFLKLDAPIGPLISSLKKLFTETNPESGLKNVINPRSFFGCVCSKSPQFRGYQQHDSHELLRCLLDGLSTEELAGRKQNGSPKRDETSSNTLVDALFGGQISSTVCCIECGHFSTVYEPFLDLSLPVPTKKPPLRKAQQVTRTKKAKVPQKKGGKTRVKVNRDTDPLPVQTLSNQLSSNKSSCPDQSVITVTEEMGNCCGDSTLLDSDEIKTAAIVADKENLSSPSLVTAGESQHMQVHDNGAMKTSSDDFTWLDYVEAGTMIDECDFISQKEDAQEVQDTASKGECLNEFHGQATCESSGPACLLKDDQYLGPKFSSANRWEDEVPLQVQGSEVLLLPYKEESSSATEIITGDGEASSSVLGGGQEELEFDGFGDLFNEPEVVVGPAPRPSSCSEVMEAGFIIGSNSESDPDEVDDTNSPVSIESCLAHFIKPELLSDENAWHCENCSKVLQRQKIEEKKQTRAISDENETGIHDEQWHAGNCCSVKVRTIGNGEIKNDQDVEGLVSHDKHDTELENGQRDVLSLIVSETDGQPFETKDTRNGELQSSSFHYTCDKESGSNLAADSCITENVQRRDSLMIGNYNSDSDEADSESVKVKRDATKRVLIYKAPPVLTIHLKRFSQDVRGRLSKLNGHVNFRETMDIRPYIDPRCINEEKYEYHLVGLVEHSGTMRGGHYVAYVRGGQRNNGKGDKEQGFTWYQASDAYVREVSLDDVLRCEAYILFYEKI | 987 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pste7g02458 | 987 | Gene3D | Cysteine proteinases | 226 | 439 | - | - | |
| Pste7g02458 | 987 | SMART | Zf_UBP_1 | 102 | 155 | IPR001607 | GO:0008270 | |
| Pste7g02458 | 987 | MobiDBLite | consensus disorder prediction | 391 | 437 | - | - | |
| Pste7g02458 | 987 | ProSiteProfiles | Ubiquitin specific protease (USP) domain profile. | 232 | 987 | IPR028889 | - | |
| Pste7g02458 | 987 | MobiDBLite | consensus disorder prediction | 82 | 103 | - | - | |
| Pste7g02458 | 987 | MobiDBLite | consensus disorder prediction | 395 | 413 | - | - | |
| Pste7g02458 | 987 | FunFam | Ubiquitinyl hydrolase 1 | 752 | 987 | - | - | |
| Pste7g02458 | 987 | FunFam | Ubiquitinyl hydrolase 1 | 220 | 446 | - | - | |
| Pste7g02458 | 987 | ProSitePatterns | Ubiquitin specific protease (USP) domain signature 1. | 233 | 248 | IPR018200 | GO:0004843|GO:0006511 | |
| Pste7g02458 | 987 | PANTHER | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE | 44 | 987 | - | - | |
| Pste7g02458 | 987 | FunFam | Ubiquitinyl hydrolase 1 | 45 | 188 | - | - | |
| Pste7g02458 | 987 | ProSiteProfiles | Zinc finger UBP-type profile. | 48 | 184 | IPR001607 | GO:0008270 | |
| Pste7g02458 | 987 | ProSitePatterns | Ubiquitin specific protease (USP) domain signature 2. | 919 | 936 | IPR018200 | GO:0004843|GO:0006511 | |
| Pste7g02458 | 987 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 45 | 184 | IPR013083 | - | |
| Pste7g02458 | 987 | Pfam | Ubiquitin carboxyl-terminal hydrolase | 233 | 984 | IPR001394 | GO:0004843|GO:0016579 | |
| Pste7g02458 | 987 | SUPERFAMILY | RING/U-box | 48 | 174 | - | - | |
| Pste7g02458 | 987 | SUPERFAMILY | Cysteine proteinases | 231 | 986 | IPR038765 | - | |
| Pste7g02458 | 987 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
| Pste7g02458 | 987 | Gene3D | Cysteine proteinases | 647 | 726 | - | - | |
| Pste7g02458 | 987 | Gene3D | Cysteine proteinases | 767 | 987 | - | - | |
| Pste7g02458 | 987 | Pfam | Zn-finger in ubiquitin-hydrolases and other protein | 74 | 168 | IPR001607 | GO:0008270 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pste7g02458 | 860 | 987 | Miscellaneous Gene Families | AT2G24640 | 35.878 | 1.22e-14 | 75.9 |