Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pste7g02440 | GATAGTCTATAAAATGGAAGATATTTTGAGTGGCAAGGACTGCGAGAGCGTCATATTCTATACGACCTTAAACCCTAGCCGCTCTGCTCTGCTCTGCTCTGCTTTGGGCTCTTCAATTTGGAACTGGAAAATGGCCTTGTTTAATAAGGTTGGGAATGTGCTGAGACAGGGTGCTAGACGCGGATCAGAAGCACCGGCTGCATCCATGCTTAATTATATTCGCTGCATGTCTTCAAGCAAGCTTTTCATTGGAGTTATCAGTCATTACTCTTTCCCTTTCCCCTTTCATATCTCAGGCCTTTCATATGGAGTTGATGACCAGTCTCTCAGGGACGCATTTGCTGGCTTTGGAGACGTGGTTGAGGCAAGGGTTATAACTGATAGAGACACTGGAAGATCAAGGGGATTTGGATTTGTCAACTTCTCAAATGATAAGTCTGCAAGTTCGGCCCTCTCTGCAATGGATGGCCAGGATCTCAATGGCCGTAGCATTCGGGTATCCTATGCAAATGACAGACCTTCAGGACCCCGATCTGGCGGCGGCTACGGTTCTCGTGATGGTGGTTGGTGATCCAATCTCTTTTATTTCTCTGCCTTCTGCCTTCTGCCTTCTAGTTTTATGCCTAAAACTACAACTCAAGTAGGAATATAATTTTTTTCCCATTTGCTTCCATCTCATGTGACCTTTGTTAGCTCTCAATGTGGGCCTCCTATCAAATTTCCAAACCCACTTCAGGGTACTGTCAATTTGATTACATGGGCTTGTATCTCCGTCCCTCGAGACGGTAGGACCGTGGTGTGAATAACACTTTTAAAATCCATATTTTGCCGTTTTTCTTTTTTAATATTTACATTCGT | 858 | 0.4441 | MEDILSGKDCESVIFYTTLNPSRSALLCSALGSSIWNWKMALFNKVGNVLRQGARRGSEAPAASMLNYIRCMSSSKLFIGVISHYSFPFPFHISGLSYGVDDQSLRDAFAGFGDVVEARVITDRDTGRSRGFGFVNFSNDKSASSALSAMDGQDLNGRSIRVSYANDRPSGPRSGGGYGSRDGGW | 185 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pste7g02440 | 185 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 93 | 161 | IPR000504 | GO:0003723 | |
| Pste7g02440 | 185 | Gene3D | - | 91 | 185 | IPR012677 | - | |
| Pste7g02440 | 185 | PANTHER | GEO13361P1-RELATED | 61 | 170 | - | - | |
| Pste7g02440 | 185 | SMART | rrm1_1 | 90 | 163 | IPR000504 | GO:0003723 | |
| Pste7g02440 | 185 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 89 | 167 | IPR000504 | GO:0003723 | |
| Pste7g02440 | 185 | CDD | RRM2_NsCP33_like | 92 | 165 | - | - | |
| Pste7g02440 | 185 | SUPERFAMILY | RNA-binding domain, RBD | 92 | 184 | IPR035979 | GO:0003676 | |
| Pste7g02440 | 185 | MobiDBLite | consensus disorder prediction | 162 | 185 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pste7g02440 | Pste-Chr7 | 23327946 | 23329097 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pste7g02440 | 91 | 177 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 41.379 | 5.51e-14 | 67.4 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Pste7g02440 | 7 | 23327946 | 23329097 | Pste7g02440 | 7 | 23327946 | 23329097 | ECH |