Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g02413 AGAGGGAAAATTGATAAGGATGGTTTTGCCGGGACAAAACACATTTTGTGGGTTGAGAGCGTGATTGAGAAGAGAGAAGAGAGAAGAGAGAAGAGAGAAGAGAGAAGAGAGATGGGAAGAGGAAGAGTGGAGTTGAAGAGAATTGAGAACAAGATCAACAGGCAAGTAACCTTCGCAAAACGAAGGAACGGGCTTTTGAAGAAAGCTTATGAGCTTTCAGTTCTTTGTGATGCCGAGCTTGCTCTCATCATCTTCTCCAATAGAGGAAAGTTGTACGAGTTTTGCAGCACTTCAAGCATGCTCAATACGCTAGAGAGGTACCAAAAATGCAACTATGGAGCGCCTGAGGCCAATGTGTCAACAAAGGAAGCCTTGGTATTGGAGTTAAGCAGTCAACAAGAATACTTGAGGTTGAAAGCACGTTATGAAACTCTACAACGTTCTCAAAGGAACCTTATGGGTGAAGATCTTGGCCCTCTAAGCAGCAAAGAGCTTGAGTCACTTGAACGGCAGCTAGATTCGTCTTTGAAGCAAATCAGATCAACAAGGATTCAATCCATGCTGGACCAGCTTTCAGATCTGCAACGTAAGGAACATTTGCTAGGTGCGGCAAACAGAGCTCTCAGACAAAGGTTGGAAGAGTATCAAATAAATTCACTCCACCTAAATCCCAGTGCTGAAAATATGGGGTATGGCAGCCATCCAGGTCAATCCCAAGGCGATGCTCTCTTTCAACCTATGGAGTGTGAGCCAACGTTACAAATTGGATATCAGCCTGATCCGGTATCAGTGGTGACAGCGGGCACAAGCATGAATAATTACATGGCTGGATGGTTACCATAAAAGATATTGTGAACTGTGGAGCACAAAGATCCTGCTGCTTCAATTTTATTTTAATTAAGGATAAGGGAAATTTGTAATATAGCACCTACACCAGACTCTACCTTACCTCATCTCCTTGTTTCGATCACCTTATCTTAATAAAACTATTGTTTTCCTTCACATTATTAATTACCTTGTACTATCTATGAATGCGACCTCACACATTTGCTGTA 1055 0.4237 RGKIDKDGFAGTKHILWVESVIEKREERREKREERREMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAELALIIFSNRGKLYEFCSTSSMLNTLERYQKCNYGAPEANVSTKEALVLELSSQQEYLRLKARYETLQRSQRNLMGEDLGPLSSKELESLERQLDSSLKQIRSTRIQSMLDQLSDLQRKEHLLGAANRALRQRLEEYQINSLHLNPSAENMGYGSHPGQSQGDALFQPMECEPTLQIGYQPDPVSVVTAGTSMNNYMAGWLP 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g02413 280 ProSiteProfiles MADS-box domain profile. 38 98 IPR002100 GO:0003677|GO:0046983
Pste7g02413 280 ProSiteProfiles K-box domain profile. 128 218 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste7g02413 280 ProSitePatterns MADS-box domain signature. 40 94 IPR002100 GO:0003677|GO:0046983
Pste7g02413 280 SMART madsneu2 38 97 IPR002100 GO:0003677|GO:0046983
Pste7g02413 280 SUPERFAMILY SRF-like 39 112 IPR036879 GO:0003677|GO:0046983
Pste7g02413 280 CDD MADS_MEF2_like 43 113 IPR033896 GO:0000977|GO:0045944
Pste7g02413 280 Pfam K-box region 131 212 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste7g02413 280 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 47 94 IPR002100 GO:0003677|GO:0046983
Pste7g02413 280 PRINTS MADS domain signature 40 60 IPR002100 GO:0003677|GO:0046983
Pste7g02413 280 PRINTS MADS domain signature 60 75 IPR002100 GO:0003677|GO:0046983
Pste7g02413 280 PRINTS MADS domain signature 75 96 IPR002100 GO:0003677|GO:0046983
Pste7g02413 280 Gene3D - 50 121 IPR036879 GO:0003677|GO:0046983
Pste7g02413 280 Coils Coil 31 51 - -
Pste7g02413 280 FunFam MADS-box transcription factor 1 50 124 - -
Pste7g02413 280 PANTHER SERUM RESPONSE FACTOR HOMOLOG 40 210 - -
Pste7g02413 280 Coils Coil 165 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g02413 Pste-Chr7 22887223 22892336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g02413 38 280 MADS-box Gene Family AT1G24260 70.325 1.30e-112 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pste7g02413 K-box 3.1e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste7g02413 7 22887223 22892336 Pste3g02792 3 20673708 20694057 PCT