Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g02355 GAAGTTCAATACATTATGGCATTCTCCTTCATCACACTTATGTGCCAGTTTTTGCTTCTTGTCCCATCTGTTATCTGTGCTTCTCCAGCTCAACTTCAAGACCCTGAATTAGTGGTCCAGGAAGTGCAGAAGTATGAAGAGAAGAGTGAAAAGTTATACATGACTTGTGATTGTGAGTGCAGGAGAATCAATGGGACAAGGAGAAAGTTGGGGTATGTTTCTTGTGGGACGGGGAACCCCATTGATGATTGTTGGAGGTGCGACCCCAAGTGGGAAAGGAAGAGGAAGCGTCTAGCAAGTTGCGGAATTGGGTTTGGAAAGCATGCGATTGGTGGAAAACATGGGAAAGTGTATGTGGTGAGTGAGGGTGGTGATAACCCTGTGAAGCCAAAGCCAGGCACATTGAGACATGCTGCTATTAAAAAAGAGCCCTTGTGGATCATTTTCAAGCACGACATGGTCATCAAGCTGCACATGGATCTCCTTGTTAATTCTTACAAAACCATTGATGGAAGAGGAGCAACTATCCACATTGCTGGAGGGCCTTGCATTAAAGTGCACAACAAGACCAATATTATAATTCACGGCATACACATCCATCATTGCAAACCGGGTGGCGATGCCATCACAATCTCTGGTGGGACCCATGTTTGGGTCGACCATTGCTCCTTGTCAAATTGTTTTGATGGTCTTATTGATGTTGTTCACGGGTCAACGGGCATCACCATTTCCAACAATTACATGACACACCATCACAAAGTCATGCTCTTGGGCCACAGTGATTCCTATGAAGAGGACAAGAACATGCAAGTCACAATAGCCTTCAACCATTTTGGAGAAGGACTAGGGGGGAGAATGCCCAGATGCAGGTTCGGATATTTCCATGTGGTGAACAATGATTACACGCATTGGCAACATTACGCAATAGGTGGGAGCTCAGCCCCTACTATTTTCAGCCAAGGCAATAGATTTGTGGCTCCAGATGATGAAGAGCACAAAGAGGTAACAAAACATTTCAAGTCATCAAAGAGTGAATGGAGAAAATGGAATTGGAGGTCAGAAGGAGATGTAATGTTGAATGGCGCATATTTCACAGCATCAGGGGCAGGAGCAACAGCGTCAAGCATGGCAGCACGACCACCTATGCTTGTGCCTTCAATCACAGCAAGGGCTGGAGCTCTTAGATGCAAAAATGGCCACCTATGCCGCTAG 1212 0.4571 EVQYIMAFSFITLMCQFLLLVPSVICASPAQLQDPELVVQEVQKYEEKSEKLYMTCDCECRRINGTRRKLGYVSCGTGNPIDDCWRCDPKWERKRKRLASCGIGFGKHAIGGKHGKVYVVSEGGDNPVKPKPGTLRHAAIKKEPLWIIFKHDMVIKLHMDLLVNSYKTIDGRGATIHIAGGPCIKVHNKTNIIIHGIHIHHCKPGGDAITISGGTHVWVDHCSLSNCFDGLIDVVHGSTGITISNNYMTHHHKVMLLGHSDSYEEDKNMQVTIAFNHFGEGLGGRMPRCRFGYFHVVNNDYTHWQHYAIGGSSAPTIFSQGNRFVAPDDEEHKEVTKHFKSSKSEWRKWNWRSEGDVMLNGAYFTASGAGATASSMAARPPMLVPSITARAGALRCKNGHLCR 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g02355 403 PANTHER PECTATE LYASE 18-RELATED 42 399 IPR045032 GO:0030570
Pste7g02355 403 SMART amb_all 152 330 IPR002022 -
Pste7g02355 403 Pfam Pectate lyase 163 324 IPR002022 -
Pste7g02355 403 SUPERFAMILY Pectin lyase-like 63 396 IPR011050 -
Pste7g02355 403 PRINTS Pollen allergen Amb family signature 285 304 IPR018082 -
Pste7g02355 403 PRINTS Pollen allergen Amb family signature 124 149 IPR018082 -
Pste7g02355 403 PRINTS Pollen allergen Amb family signature 307 326 IPR018082 -
Pste7g02355 403 PRINTS Pollen allergen Amb family signature 101 118 IPR018082 -
Pste7g02355 403 PRINTS Pollen allergen Amb family signature 349 373 IPR018082 -
Pste7g02355 403 Gene3D - 78 395 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g02355 Pste-Chr7 22237761 22239577 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g02355 5 402 Polysaccharide Lyase AT5G63180 59.719 0.0 508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste7g02355 7 22237761 22239577 Pste7g02355 7 22237761 22239577 ECH
Pste7g02355 7 22237761 22239577 Pste6g01928 6 8924514 8926768 ECH
Pste7g02355 7 22237761 22239577 Pste2g00495 2 4565004 4567260 ECH