Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g02335 AAAGAGCAAAGGTGAGAGTCTTGGAGACGACGAAAGCAAGACCAAGTGGTAGCGCACAGTGAGAGGACAAAACAACACAAACACACTTTCACTTTCACTTTCACTTAGGGTTTCAATTTGCTTCGCCATGAAGAAAGCCTCATACCCTAACTCCATCCCTCGCCGTAACGATTTCAACCGTGAGCCACCCCACGGCGCCGGTTGGAGTCCCGCCCGTCCCACATCGTCCCCACCAGTGGAAACCGCGGCTACACCCGCACACCCCCCGTATCGGCCGCCCTCCTGAGCCCTACTTCACGGTGGAGCTTCGCCTTGGCCGCCGCCCTCTCCGCCGTGACCACGTGGAGGCGCTGATCTCTGGATGCAAGTACAAGGCGGATACCTTCACTTTCTATCCCGTTGATGACGTGGCCGCCGCTCTGAGGTACCGGAACTGGGAGCACGCGCGCCACACCGTGGTTTGGTTCTGGGAGTCGCGGCTCGAGGAGAAGCACGATTTCACGCCCGGTCTGGACTCCAACGTTGCAGTGAGGGGTGATATGGATGGCGACATTCGACAGTTATTCGCGAAGCATGTGAGGGCGTTGATGAAGGGGAAGGAGGTGAAGCGTTGGGTGGCGGAGAGTGAACGGTTGTCGAAGGAGATTGCAAGGGTTTCAAGTAGACTCAGTACGCCCTTGCCGACTGCCACTCATTTCCAGCTTGGGGTGACCAAGAAAGGGCTTGTCGATGATAATAATCTGGTTCAAAGGCGATTGAACGAGTTTGCGTCTGCAATGGCCTGTATGTTGAAGTATTTGAAGGATGGTGATGACGTCCATGTGGATGGTGTGCATGTTTTTAGGTTTGATGGATGTTTTGATTGGAAGCGAATTCATTGCCTTATCAAAAGGGAATGCCAGAGACTCCATGATGGATTGCCCATTTATGCTTACCGTAGGGATATTCTCCAGGAAATACATTCTCAGCAGATAATGGTATTAATTGGAGAGACTGGTTCTGGGAAGAGTACACAGCTGGTACAGTTTCTTGCTGATTCAGGCATTGGTGCTGATGAATCCATTATATGCACTCAACCTCGCAAGCTTGCTGCCAAATCAGTGTCTCAAAGGGTCAAGGAAGAAAGCATTGAATGTTATGAAGGCCATTCAATCAAATATTGTTCTACCTTTTCATCCTTGCATGGGTTTGATTCCAGGATAGCATTCATGACAGATCATTGTTTATTGCAGCACTACATGAGTGATAAGAATTTGTCTGGGGTCTCGTGCATAATTATTGACGAGGCTCATGAGAGGAGCTTAAATACAGATTTACTGTTGACTTTGTTAAAGGATTTACTTTGTAAGAGGGTTGAAATGCGGCTTATCATTATGTCTGCTACAGCTGATGCAAAGCAGCTATCTGGTTACTTTTATGGGTGTGGTATTTTTCGTGTGCTTGGGAGAAGCTTTCCGGTGGATGTCAAATATGTTCCTTCTGACTATGCTGAGCATTCTAGTTCTGCTGTAGTTGCCTCATATGTTTCTGATGTTGTTAGAATGGCAAATGAGATTCATAAAAAAGAGAAAGAGGGAACTATTCTTGCCTTTTTGACTTCTCAGATAGAAGTAGAATGGGCTTGTGAAAAGTTTCAAGCTCCCTCCGCAGTTGCTTTGCCCTTGCATGGAAAACTTTCAACCGAAGAACAATTTCGTGTTTTTCAGAACTACCCTGGAAAGAGAAAAGTGATATTTTCAACAAATCTTGCGGAGACATCACTTACAATTCCTGGTGTTAAGTATGTTATAGATTCTGGGTTGGTTAAAGACAGCAGATTTGATCCAGGCACTGGGATGAATGTACTTAAGGTTTGCTGGATCAGCCAGAGCTCTGCTGATCAACGGGCTGGTCGTGCCGGGAGGACTGAACCTGGTGTGTGCTATAGACTTTACTCGGAAGCTGGTTATCAGTCTATGGACCTAAATCAGGAGCCGGAGATTCGGAGAGTTCATCTTGGGGTAGCAGTTTTGAGGATCCTTGCCTTAGGAGTGAAGAATGTGCAGGATTTTGATTTTCTGGATGCACCAAGTCCTAGATCTATTGATTTGGCAATCAGGAACCTAATTCAATTAGGAGCCATTGAACTGAACAATAATGTTCACGATTTAACTTCTGAAGGTTGGCGCTTGGTAAGAATGGGAATTGAACCTAGGCTTGGTAAACTTATACTAGGATGTTTCAAATATGGTTTGGGCAGAGAAGGTATTGTTCTTGCAGCTGTGATGGCCAATGCTAGCAGCATCTTTTGCAGAGTTGGCAGCGAATTTGATAAACAAAGATCTGATTGTCTTAAAATGAAATTTTGTCATTATGATGGTGACCTTTTTACTCTCCTCTCTGTGTACAAGGAATGGGAAGCTTTGCCTCGAGAGAGGAAGAACAAATGGTGTTGGGAAAACAGCATCAATGCCAAATCCTTGAGGAGGTGCCAAGACACAATTTTGGAGCTAGAAACTTGCCTTGAGCGTGAACATGGCTATGTAACTCCGAGTTACTGGCGTTGGGACCCTTGTATGCCCTCTAGTCATGATAAGAATTTGAAGAGGGTTATATTGTCCTCTCTTGCTGAGAATGTAGCCATGTACTCTGGCTGCAATCAACTTGGTTATGAAGTGGCACAAACTGGGCAACATGTGCAACTACATCCATCCTGTTCATTGCTTGTATTTGCTCAGAAACCAAGATGGGTGGTTTTCGGTGAACTTCTTTCCATTTCTAATACATATTTAGTCTGCGTGAGCGCATTTGATTTTCAATCATTATACAACCTTTGCCCTGCTCCCCTGTTTGATGTATCTGAAATGGCCGAGCGGAAGTTGCAAATGACAACACTGTCTGGTCTTGGTTATATTCTTCTCAAGCGATTTTGTGGAAAAGCCAATAGTAATTTGCTTGGTCTTGTTTCACGTACAAGGAAAGCTTGTATGGATGAACGCATCTGCATTGAAGTGAATGTTGACCACAATGAAATCCATTTATATGCCACTTCAAATAACATGGATACAGCCCTTGGGTTGATTGATGATGTTCTAGAATATGAGAGAAAGTGGTTACGCACTGAATGTATGGAAAAGTGTTTGTATCATGGGTCTGCTTTCTCTCCACCTGTAGCATTGTTTGGGTCTGGTGCTGAGATAAAACATTTGGAACTTGAGAAACGTGCCTTGAGTGTTGATGTGTGTCATCCAAACATAAATGCAATTGATGACAAGGAGCTCTTAATGTTTATTGAGAATAATAGCTCTGGTTGCGTCTGTGCCGTGCACAAATTCACAGGCAATTTCAAAGATGAAGATAAGGAAAAGTGGGGCAGGATAACATTTATGTCCCCTGATGTTGTCAGAAGAGCTGCTGAGCTAGATGGACAGGATTTTTGTGGCTCCTCTTTGAAAATTGTTCCTTCACAATTGGGAGGGGATAAAACATTTTCATTCCCTGCTGTTAAAGCAAAAATTTCTTGGCCTCGTAGGCTTAGTAGGGGATTTGCCATTGTTAAATGTGATATAAGGGATGTCAATTATATCTTGGGAGATTTTTATAACCTTGCAATAGGAGGAAAGTACGTTCGATGTGAAGTTGGCAAAAAGAGTTTGGACAGTGTTGTTATAAATGGCCTTGACAAAGAGCTCTCAGAAGCTGAAATATTGGATGTGCTCAGAACTGCTACTAATAGAAGGATTTTGGATTTTTTCCTGGTGAGAGGGGATGCTGTTGGAAATCCACCATGCAGTGCTTTGGAAGAGGCACTTCTAAAAGAAATTTACCCCTTTTTGCCCAAGAGGAACCCTCACATTAGTTCTTGCCGAGTTCAGGTGCTTGTACCCGAGCCTAAGGATGCTTTCATGAGAGCTTTAATCACTTTTGATGGAAGATTACATCTAGAGGCAGCAAAAGCATTGGAGCAAATTGAAGGAAAGGTGTTACCTGGATGCCTTTCATGGCAAAAGATAAAATGCCAGCAGTTGTTTCATAGCTCCATGATATTTCCTCCTCAACTCTATCGAGTGGTTAAGGAACAACTGGATGAAGTACTTGCTAGCTTTAGGAATTTGAAAGGTCTTGAATACAATGTGGACAGGACAATTAATGGTTCCCACCGAGTGAAGATTACAGCGAACGCCACAAGGACTGTGGCAGAAGTTAGAAGACCTCTGGAAGAATTATTGAGAGGGAAAATCATTGAGCATGACAGCTTCACACCTGCAGTTCTCCAGCTCATGTTGTCCAGGGATGGGTTTAACCTTAAAAACTCATTGCAGCAAGAGACAGGAACTTACATTCTTTTTGACAGGCACAACTTGAATTTACGGGTGTTTGGTTCCCCAGATAAGGTTGCTTTGGCTCAGGAGAAGGTGATTCAATCCCTCCTTTCTCTCCATGAAGAAAAGCTGTTAGAAATCCATCTTAGAGGGAGAGATCTACCTCCTGATCTAATGAAGCAAATGATTAAGAATTTTGGGCCAGATCTTCATGGACTGAAGGAGAGGGTACCTGGGGTAGATCTTACACTCAACATACGTCACCATACAATCATTCTTCATGGTAGCAAGGAGTTGAAACCCAGAGTAGAGGAAATAATTTTTGAGATTGCTCGCTCAAGCCATCATTTGGTTGAGATATTTGACAATGGACCTAGTTGCCCAATTTGCTTGTGCGAGGTTGAGGATGGATACCGGCTTGAAGGCTGTGGTCATATGTTCTGCCGGTTGTGTCTGGTTGAACAATTTGAATCTGCTATTAAAAACCAAGGCATTTTCCCAATATGTTGTACTCACAGGGACTGTGGAGATCCCATTCTACTTACAGATTTGAGATCTCTCTTATTTGGGGATAAGTTGGAGGAACTTTTCAGGGCTTCTTTGGGAGCTTTTGTGACTACGAGCGGGGGAACTTACAGGTTTTGCCCTTCTCCTGACTGCCCCTCAATTTATCGAGTTGCAGATCCTGGGACTGCTGGTGAGCCATTTATTTGTGGGGCTTGTTATTCAGAGACTTGTACCAGGTGCCACCTGGAGTATCACCCCTACCTTTCATGTGAGAGATATAAAGAATTCAAGGAAGATCCAGACTCATCTCTGAAAGAGTGGCGCAGAGGGAAAGAACAAGTTAAAAGCTGTCCGGCATGCGGGTATGTAATTGAGAAGGTAGATGGGTGCAATCATGTTGAGTGCAAGTGCGGAAAACATGTCTGCTGGGTTTGCTTGGAGTTCTTTAGTGGTGGTGATGAATGTTATAATCATTTGAGAAATATACATATGGCCATCATATAAATTGCCATTTAGTACCATTTTTCTTAGATATGTAAATTTAGCGTAGTGGTATATATAACACAGCACATGGAAGTAGCAAAATGTACAGCTGTCTTAAACTAATGTTGATGTATATAGCAGCAGCAGTTCAGCCTCTTGTATATCTAATAGAAGTTGCACGGTGTATGTTGGTCGGAACCTTTTTTGTTATGCTTCACCGTATTTGTCTTCCAAGCAGTTCAATACGGCTGTTTAAGTGGCCTTACCGTTGCAAACGAT 5570 0.4379 MDGDIRQLFAKHVRALMKGKEVKRWVAESERLSKEIARVSSRLSTPLPTATHFQLGVTKKGLVDDNNLVQRRLNEFASAMACMLKYLKDGDDVHVDGVHVFRFDGCFDWKRIHCLIKRECQRLHDGLPIYAYRRDILQEIHSQQIMVLIGETGSGKSTQLVQFLADSGIGADESIICTQPRKLAAKSVSQRVKEESIECYEGHSIKYCSTFSSLHGFDSRIAFMTDHCLLQHYMSDKNLSGVSCIIIDEAHERSLNTDLLLTLLKDLLCKRVEMRLIIMSATADAKQLSGYFYGCGIFRVLGRSFPVDVKYVPSDYAEHSSSAVVASYVSDVVRMANEIHKKEKEGTILAFLTSQIEVEWACEKFQAPSAVALPLHGKLSTEEQFRVFQNYPGKRKVIFSTNLAETSLTIPGVKYVIDSGLVKDSRFDPGTGMNVLKVCWISQSSADQRAGRAGRTEPGVCYRLYSEAGYQSMDLNQEPEIRRVHLGVAVLRILALGVKNVQDFDFLDAPSPRSIDLAIRNLIQLGAIELNNNVHDLTSEGWRLVRMGIEPRLGKLILGCFKYGLGREGIVLAAVMANASSIFCRVGSEFDKQRSDCLKMKFCHYDGDLFTLLSVYKEWEALPRERKNKWCWENSINAKSLRRCQDTILELETCLEREHGYVTPSYWRWDPCMPSSHDKNLKRVILSSLAENVAMYSGCNQLGYEVAQTGQHVQLHPSCSLLVFAQKPRWVVFGELLSISNTYLVCVSAFDFQSLYNLCPAPLFDVSEMAERKLQMTTLSGLGYILLKRFCGKANSNLLGLVSRTRKACMDERICIEVNVDHNEIHLYATSNNMDTALGLIDDVLEYERKWLRTECMEKCLYHGSAFSPPVALFGSGAEIKHLELEKRALSVDVCHPNINAIDDKELLMFIENNSSGCVCAVHKFTGNFKDEDKEKWGRITFMSPDVVRRAAELDGQDFCGSSLKIVPSQLGGDKTFSFPAVKAKISWPRRLSRGFAIVKCDIRDVNYILGDFYNLAIGGKYVRCEVGKKSLDSVVINGLDKELSEAEILDVLRTATNRRILDFFLVRGDAVGNPPCSALEEALLKEIYPFLPKRNPHISSCRVQVLVPEPKDAFMRALITFDGRLHLEAAKALEQIEGKVLPGCLSWQKIKCQQLFHSSMIFPPQLYRVVKEQLDEVLASFRNLKGLEYNVDRTINGSHRVKITANATRTVAEVRRPLEELLRGKIIEHDSFTPAVLQLMLSRDGFNLKNSLQQETGTYILFDRHNLNLRVFGSPDKVALAQEKVIQSLLSLHEEKLLEIHLRGRDLPPDLMKQMIKNFGPDLHGLKERVPGVDLTLNIRHHTIILHGSKELKPRVEEIIFEIARSSHHLVEIFDNGPSCPICLCEVEDGYRLEGCGHMFCRLCLVEQFESAIKNQGIFPICCTHRDCGDPILLTDLRSLLFGDKLEELFRASLGAFVTTSGGTYRFCPSPDCPSIYRVADPGTAGEPFICGACYSETCTRCHLEYHPYLSCERYKEFKEDPDSSLKEWRRGKEQVKSCPACGYVIEKVDGCNHVECKCGKHVCWVCLEFFSGGDECYNHLRNIHMAII 1590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g02335 1590 FunFam RBR-type E3 ubiquitin transferase 500 606 - -
Pste7g02335 1590 Gene3D - 113 303 IPR027417 -
Pste7g02335 1590 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 331 497 IPR001650 -
Pste7g02335 1590 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 479 522 - -
Pste7g02335 1590 SUPERFAMILY RING/U-box 1380 1440 - -
Pste7g02335 1590 ProSiteProfiles Zinc finger RING-type profile. 1381 1423 IPR001841 -
Pste7g02335 1590 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 1509 1587 - -
Pste7g02335 1590 SMART helicmild6 359 457 IPR001650 -
Pste7g02335 1590 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 681 760 IPR011709 -
Pste7g02335 1590 Gene3D - 304 476 IPR027417 -
Pste7g02335 1590 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 137 301 IPR014001 -
Pste7g02335 1590 PANTHER ATP-DEPENDENT RNA HELICASE 116 763 - -
Pste7g02335 1590 Gene3D - 1491 1588 - -
Pste7g02335 1590 CDD SF2_C_RHA 305 465 - -
Pste7g02335 1590 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 304 476 - -
Pste7g02335 1590 SMART ibrneu5 1514 1578 IPR002867 GO:0008270
Pste7g02335 1590 SMART ibrneu5 1448 1513 IPR002867 GO:0008270
Pste7g02335 1590 Pfam IBR domain, a half RING-finger domain 1528 1572 IPR002867 GO:0008270
Pste7g02335 1590 Pfam IBR domain, a half RING-finger domain 1458 1513 IPR002867 GO:0008270
Pste7g02335 1590 SMART ring_2 1381 1423 IPR001841 -
Pste7g02335 1590 ProSitePatterns Zinc finger RING-type signature. 1397 1406 IPR017907 -
Pste7g02335 1590 Gene3D - 479 522 IPR042035 -
Pste7g02335 1590 Pfam Helicase associated domain (HA2) 518 612 IPR007502 GO:0004386
Pste7g02335 1590 SUPERFAMILY RING/U-box 1464 1519 - -
Pste7g02335 1590 CDD BRcat_RBR 1465 1516 - -
Pste7g02335 1590 SUPERFAMILY RING/U-box 1535 1582 - -
Pste7g02335 1590 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1378 1456 IPR013083 -
Pste7g02335 1590 Pfam DEAD/DEAH box helicase 134 286 IPR011545 GO:0003676|GO:0005524
Pste7g02335 1590 SMART ultradead3 125 310 IPR014001 -
Pste7g02335 1590 CDD Rcat_RBR_DEAH12-like 1536 1586 - -
Pste7g02335 1590 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 1376 1458 - -
Pste7g02335 1590 ProSitePatterns Zinc finger C2H2 type domain signature. 1565 1586 IPR013087 -
Pste7g02335 1590 Pfam Helicase conserved C-terminal domain 337 456 IPR001650 -
Pste7g02335 1590 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 243 252 IPR002464 -
Pste7g02335 1590 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 110 303 - -
Pste7g02335 1590 ProSiteProfiles TRIAD supradomain profile. 1377 1585 IPR044066 -
Pste7g02335 1590 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 635 IPR027417 -
Pste7g02335 1590 SMART ha2_5 517 613 IPR007502 GO:0004386
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g02335 Pste-Chr7 21974949 21982141 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g02335 1393 1582 ARIADNE family AT3G27710 29.843 5.89e-14 74.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste7g02335 7 21974949 21982141 Pste7g02335 7 21974949 21982141 ECH