Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g02310 GGTAAGAGAAAAAAAATCTGTAATCTTACATCACATCATTTTTGAAAACCAAATCCTCTCTCAATTTTCAATTTTTTCATCCTCTCTTACAAATACTAAACTAAATTTTCCATAGTGAAGTATTTTGTGTTTTGATTTTCTTCGCCATTGTTGCGACAGATCTTGTTTCAGTCAGGTGCCATGTCGCCATACATACAATAATTTTCTCTTTATGTGAAGAAGAAGACCATACGAATCTTTCTCTCAATCCGTGTCTTTTTACGATCTTATTTCTTGTTTTTGTTTTCCTCAACGTCCAATGAGATCTATCTATTTGTAATTTTTTTAAACTGTTTCGAATAAGTTTGTCTTAAAACGAGGAAACAAAAATCTCATGTTGAGTTGAGTTCATGAGTTGTGTTAAAACCCACTTTTAGGTGGTGTTGGGTTTTCGTTAACCAAATTATTCTCAACATTGTTCAAATTCTTGAAAATCTTGAAGAAAGCATACAAAAGAGTTGCAAAAAACAAAATCTTGTTAGGGTTTTGTTTTGTTTTGTTTGATTTGAATGGATTATCCTCGAGACGGGAACGTCGTGCAAATAATCACCGGTGCTGGTGGCGGTGGAGGTGACAGTTGGTCCGGCGATCCGGCGGATTGGGCGACGGAAGATGAGTACCGTTTTTGGAACAACAGTAATGGGGACTCCGAAACGACGCCGTCGAACTCGAATTATGAGGCGCCACCGAGCAAGAAGTCACGGAATTCGCAGGAGAGCAACAGCAGCAGCAGCAACAACAACAACAGGTCGAAGGCAATAGGGAAGATGTTCTTCAAGACGAAATTGTGTTGCAAATTTAGGGCAGGGACTTGTCCGTACATAACCAACTGCAATTTCGCCCACAGCATTGAGGAGCTCCGCCGGCCGCCGCCGAATTGGCAGGAGATCGTGGCGGCCCATGAGGAGGAGAAGGCGGTGATGACGGAGCCCAGGGAGGAGTTCCAGATCCCCACTGTGGGGTCCTCCACGTTTGCAGGGGACATGATGCAGAGGTCATATAAGGGAAGGCATTGTAAGAAGTTTTACACCGAGGAAGGCTGCCCCTATGGGGATAGTTGCACCTTTCTCCATGATGAGCAATCCAAAAATCGCGAGAGTGTCGCGATTAGTTTAGGCCCTGGTGGTTATGGTGGTGGTGGTGGTTCTGGTAGTGGTGGCGGTGTCAGCTGTGGCAGTGGAGCTAATGGCTCTGGGAATGGGCCTAATTCAAAGCCCTCTAATTGGAAAACAAGGATTTGCAATAAGTGGGAGATGACCGGGTATTGCCCCTTTGGCAATAAATGCCATTTTGCTCATGGTGCCACAGAGCTGCACAGATACGGAGGCGGGCTCATGGAGGGAGAAAGCAGAGAAGCCACATCCACGGTTGCCAGCGACACGAACAAGGGAGTACCTTCAAAAGCTTCTGCAGACAATGTGGTTGCAGCAGCTACCCCTGTTGCTCATTCTGATGTGTACCATATTGGAGTCCCTTCACAAAGGCCTTCCATTGTGCTTCAGAGGCCAGGGCAGAGAACTCACAACAAATGGAAAGGTCCAGATAAAATCAGTAGGATATATGGTGATTGGATTGATGACATCGAATAGTGTTTTAATCCCAGTTATGAGAGCATGCATATGTACCATGAAACCAAATACGCAACGCTTTTTAATTCATATGTTGTTTTATTAGGTAATTTATCTTATGATCCTTAACTTCCAGGGCGATAGCACTTTAGTTCGTTTCATGGATGACTATTTTCTATGTTTATTGTAGCAACCGTTTTATTGTAGTTGTATTTGCATATTACAGTATCC 1838 0.4369 MDYPRDGNVVQIITGAGGGGGDSWSGDPADWATEDEYRFWNNSNGDSETTPSNSNYEAPPSKKSRNSQESNSSSSNNNNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEEKAVMTEPREEFQIPTVGSSTFAGDMMQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYGGGGGSGSGGGVSCGSGANGSGNGPNSKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYGGGLMEGESREATSTVASDTNKGVPSKASADNVVAAATPVAHSDVYHIGVPSQRPSIVLQRPGQRTHNKWKGPDKISRIYGDWIDDIE 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g02310 359 ProSiteProfiles Zinc finger C3H1-type profile. 238 266 IPR000571 GO:0046872
Pste7g02310 359 ProSiteProfiles Zinc finger C3H1-type profile. 163 191 IPR000571 GO:0046872
Pste7g02310 359 SUPERFAMILY CCCH zinc finger 236 269 IPR036855 GO:0046872
Pste7g02310 359 PANTHER CCCH ZINC FINGER/TIS11-RELATED 222 284 IPR045877 GO:0003729
Pste7g02310 359 MobiDBLite consensus disorder prediction 1 81 - -
Pste7g02310 359 SMART c3hfinal6 238 265 IPR000571 GO:0046872
Pste7g02310 359 SMART c3hfinal6 163 190 IPR000571 GO:0046872
Pste7g02310 359 SMART c3hfinal6 88 114 IPR000571 GO:0046872
Pste7g02310 359 Gene3D - 83 119 - -
Pste7g02310 359 Gene3D - 232 270 - -
Pste7g02310 359 Pfam CCCH-type zinc finger 167 189 IPR041367 -
Pste7g02310 359 SUPERFAMILY CCCH zinc finger 162 191 IPR036855 GO:0046872
Pste7g02310 359 FunFam Zinc finger, CCCH-type 157 195 - -
Pste7g02310 359 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 239 264 IPR000571 GO:0046872
Pste7g02310 359 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 89 113 IPR000571 GO:0046872
Pste7g02310 359 ProSiteProfiles Zinc finger C3H1-type profile. 88 115 IPR000571 GO:0046872
Pste7g02310 359 FunFam Zinc finger CCCH domain-containing protein 84 120 - -
Pste7g02310 359 SUPERFAMILY CCCH zinc finger 86 119 IPR036855 GO:0046872
Pste7g02310 359 Gene3D - 156 204 - -
Pste7g02310 359 MobiDBLite consensus disorder prediction 37 81 - -
Pste7g02310 359 FunFam zinc finger CCCH domain-containing protein 15-like 232 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g02310 Pste-Chr7 21559947 21563297 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g02310 240 268 C3H Transcription Factor Family AT1G68200 62.069 3.34e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pste7g02310 zf-CCCH 1.1e-10 CL0537