Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g02154 ATAGCAGTAGTTATTATTTGCAATAAAAATCTATTCATTTTCTCTCTTTAATGCATTTTCATTATGGTGACCAAGATATGATCTGTTATCAATATATATATTCAATGACATTCATAGTCCAGAGTCTGCTAACCTGAGTTGTGTCTCAACTTGCTTTTCTTTCACCCTCAAAATTTCCCATTCTCTTTTTATCTTTAACTTCTCAGTTTAAATCTTCAGATCACAACCGATCCACCATTAACCACTTTCTCTTCTCAAGCTCAAGTTGTTGTGATAGGCAAATCTAATAAGAAAAGTAGTCTCTGAAGCCGATCCAGTGCCTTGTGAATTTGGAATTGGTGGTGAATTTAGATCTATAAGCCGCAGCAATGTCTTTTATCGGTACCCAGCAAAAGTGCAAGGCTTGTGAGAAAACGGTTTATCCCGTTGATCAGCTTTCTGCTGATGGCACTGCTTATCACAAAGCTTGCTTCAGGTGCTCTCACTGCAAAGGAACATTAAAGCTGAGCAACTATTCCTCAATGGAAGGTGTTCTTTATTGTAAGCCTCACTATGAGCAGCTTTTCAAGGAGACTGGCACCTTCAAGAAGAACTTCCAGTCACCTGCAAAGCTAGCAGATAAGACAACTCCTGAGCTGACAAGGTCCCCAAGCAAAGCAGCAAGCATGTTTTCTGGCACACAGGAGAAGTGTGCTACATGTGGAAAAACTGCTTATCCATTGGAGAAGGTAACAGTGGAGGGACAGGCCTATCACAAATCGTGTTTCAAGTGTTCACATGGTGGTTGTCCCATAACCCCATCAAATTATGCAGCCCTTGAGGGTATTTTGTATTGCAAGCATCATTTCTCCCAGCTTTTTAAGGAGAAAGGGAGCTATAATCATCTTACTAAGTCTGCATCAATCAAACGGGCAGCAGCAGCAGCAGCCTCTGTTCCAGAATCTTGAATGACGGTTCTTTAAATTGCCTTTTCTTTTTCAAATACATTTTGGTCTATCGGGCAAGTGTTTGTATGTGTGGCCTTTTTTGTTTGTTCTCGTGAGTTGATAATTTCTGATACTTTTTACTTACAAATGCGTGGTGTGCAAATCTTGTGTGGTTTATTTATACAATGGACCATGTATGACTAATGAGAGTGTGATTTGCAAGATATATCTTTCCAAGTTGATGGCAATGTCTTTCATTGCATATCCTACCGAAAGATATCGTATATTTAATATTCTTATGCTATTTAGAATATTGACAAAATCGGATGGTTCGTATATCATTGCTGGCTTTAGTCTCTTCCAAGTTAGAACATCTTTAGTGGGGCAAGTTCTTAAAGTGATTTTTAATCATAAAAATTGTTTTTTACAGGAATTGCAATT 1367 0.3833 MSFIGTQQKCKACEKTVYPVDQLSADGTAYHKACFRCSHCKGTLKLSNYSSMEGVLYCKPHYEQLFKETGTFKKNFQSPAKLADKTTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVEGQAYHKSCFKCSHGGCPITPSNYAALEGILYCKHHFSQLFKEKGSYNHLTKSASIKRAAAAAASVPES 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g02154 192 CDD LIM2_SF3 108 168 - -
Pste7g02154 192 Gene3D Cysteine Rich Protein 102 172 - -
Pste7g02154 192 Gene3D Cysteine Rich Protein 4 74 - -
Pste7g02154 192 ProSiteProfiles LIM domain profile. 106 166 IPR001781 -
Pste7g02154 192 Pfam LIM domain 108 163 IPR001781 -
Pste7g02154 192 Pfam LIM domain 10 65 IPR001781 -
Pste7g02154 192 FunFam LIM domain and actin-binding 1 4 74 - -
Pste7g02154 192 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 100 133 - -
Pste7g02154 192 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Pste7g02154 192 SMART lim_4 107 159 IPR001781 -
Pste7g02154 192 SMART lim_4 9 61 IPR001781 -
Pste7g02154 192 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Pste7g02154 192 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Pste7g02154 192 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 134 173 - -
Pste7g02154 192 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Pste7g02154 192 CDD LIM1_SF3 6 68 - -
Pste7g02154 192 FunFam LIM domain and actin-binding 1 102 172 - -
Pste7g02154 192 PANTHER OS06G0237300 PROTEIN 5 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g02154 Pste-Chr7 19812824 19816560 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Pste7g02154 LIM 3.1e-11 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste7g02154 7 19812824 19816560 Pste7g02154 7 19812824 19816560 ECH