LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste7g02113	GTGAATGGAGAGAGTGAGAGTGTGGGTGTGGGTGTGGGTGGGGGTGGTGGAGGTGGTATCAGGGGCCACACCATGTCCCCCGTGCGGGAACAGGACGGTGCCGTTTCCCCTGAGCACAAGCGCAGCATGCGGGGACCCCTCCTACAAAATCAGGTGCAGCAGTTCAGGCACGCTGTACTTGGACACGCTGAACAACACGTATCCGATAGAGTCCATCGACGCCAAGGCCCAGCGGCTAGTGATCAAACCCGCTCCGCTGGTGTCGAACAGCTGCGTCTCCACCGATAAGGTGCACCAGGGGATCCAGCTGAACAACACCCTCCCCTTCAACATCACCAGCTCCAACACCATCGTCTATCTGAACTGCACGCGCTCCCTCCTTCAGTCGCCGCTCAACTGCTCCGCCGCCAGTGCCTGCCACACCTACATCAACTCCACCTCCTCCGCCGCCCCTTGCCAGTCGGGGCCCCTCTGCTGCACCTATCGCACGGGTGGCTCCAGCAACTCCTACATGATTCGTGTGAGGGAATCTGGCTGTAGCGCCTACTCCAGTTTTGTTAACCTCAATTCGGCTCTCCCCGTCACCCTCTGGCCCCCACCCGGTCTCGAGATTCAGTGGCAATCCCCCCATGAAACTCTTTGTGTGTCTCACCTCGATTGTGATTCTTCCACTTCCACTTGTCATCCCGATTCTTCTTCCTCTCCCTCACGCTCCATCAAGCGATGCTTCTGCAACCCCGACTTCTTCTGGGACCCTATTCAAGGCCTCTGCGCTCCAAAAATTACTTGTCAGAATCCTCATGGTTGTGGGGATTCAACTAACACAACTGCCATCATAGCAGGTTCGGTATCTGGGGCTGGGGCTGTGCTCGTCCTTGCCATAATTGCATTTCTACTCTACAAACGCCACAAGCGCATAAAAGAAGCACGAGCACGGCTTGCCAAGGAGCGTGAAGGTATTCTGAATGCCAGTAATGGGGGCAGAGCCGCTAAACTTTTCAGTGGCAAAGAGATAAAGAAAGCCACAAACGACTTCTCCAGTGACCGGCTTCTTGGTGTTGGAGGCTATGGTGAAGTATACAAGGGCATTCTTCAAGATGGCACTGTTGTGGCTGTCAAGTGTGCCAAGCTTGGGAACCCCAAAGGCACTGATCAAGTCCTCAATGAGGTTCGCATATTATGCCAAGTTAACCACCGCAACCTTGTTGGTCTACTTGGTTGCTGCGTGGAACTGGAGCAGCCTATTATGGTTTATGAGTTCATAGAAAATGGGACCCTTCTTGATCACTTGCAAGGTCAAATGCCTAAGGGCCGTGGCTTGCTTACTTGGACTCATCGCCTTCAAATAGCACGCCACACTGCTGAGGGTCTTGCTTACCTTCACTTCATGGCTGTACCTCCTATCTACCATAGAGATGTCAAGTCCAGCAACATTCTGCTAGATATCAAGCTGAATGCCAAGGTTTCTGATTTTGGGTTGTCTAGGTTGGCTCAGACAGATATGAGTCATATCTCTACTTGTGCTCAAGGGACCCTTGGGTACCTTGACCCTGAGTATTATAGGAACTACCAATTGACTGATAAGAGTGATGTTTACAGCTTTGGGGTGGTGCTGCTTGAGCTTTTGACAGCTCAGAAGGCAATAGATTTTAACAGGGCAGCAGATGATGTGAACTTGGCAGTTTATGTGCACCGGATGGTGGCAGAGGAAAAGTTGATGGATGTCATTGATCCAGTGTTGATGAATGGAGCTACCACTATAGGGCTAGAGACGATGAAGGCAGTGGCGTTTTTGGCATTGGGTTGCTTGGAGGAAAAGAGACAGAACCGACCTTCAACGAAAGAGGTAGCAGAGGAGATTGAATATATCATTAGTATTGCCTCCGCAAAGGTAGTGGAGTAGTTTCTTTTGATGTTAATGAGTTGTCCAGTTGTCTTGCGTTTGTTGTTGCTAGACTTTAGGCTCTTGTTTTCTGCATCTATATTTTTAGGTTTAATGCACTATAAATGTATTATGTATATGTAAATGTGTCTTTTTACCTTTGCTGAGGGAAAAGACGTTCTGCTGTAAAACACAAGTTTAAAAAAGCTGTTTTAAATCCTCGTCTTGCTAAGCTGAAGCATCTAATATTCAACGTTTTGCACTTGCTCTG	2153	0.4974	MERVRVWVWVWVGVVEVVSGATPCPPCGNRTVPFPLSTSAACGDPSYKIRCSSSGTLYLDTLNNTYPIESIDAKAQRLVIKPAPLVSNSCVSTDKVHQGIQLNNTLPFNITSSNTIVYLNCTRSLLQSPLNCSAASACHTYINSTSSAAPCQSGPLCCTYRTGGSSNSYMIRVRESGCSAYSSFVNLNSALPVTLWPPPGLEIQWQSPHETLCVSHLDCDSSTSTCHPDSSSSPSRSIKRCFCNPDFFWDPIQGLCAPKITCQNPHGCGDSTNTTAIIAGSVSGAGAVLVLAIIAFLLYKRHKRIKEARARLAKEREGILNASNGGRAAKLFSGKEIKKATNDFSSDRLLGVGGYGEVYKGILQDGTVVAVKCAKLGNPKGTDQVLNEVRILCQVNHRNLVGLLGCCVELEQPIMVYEFIENGTLLDHLQGQMPKGRGLLTWTHRLQIARHTAEGLAYLHFMAVPPIYHRDVKSSNILLDIKLNAKVSDFGLSRLAQTDMSHISTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTAQKAIDFNRAADDVNLAVYVHRMVAEEKLMDVIDPVLMNGATTIGLETMKAVAFLALGCLEEKRQNRPSTKEVAEEIEYIISIASAKVVE	632

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste7g02113	632	Gene3D	Transferase(Phosphotransferase) domain 1	420	630	-	-
	Pste7g02113	632	ProSitePatterns	Protein kinases ATP-binding region signature.	350	372	IPR017441	GO:0005524
	Pste7g02113	632	FunFam	Wall-associated receptor kinase-like 20	306	419	-	-
	Pste7g02113	632	PANTHER	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4	26	622	IPR044652	GO:0004672
	Pste7g02113	632	SMART	serkin_6	344	622	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste7g02113	632	ProSiteProfiles	Protein kinase domain profile.	344	622	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste7g02113	632	SUPERFAMILY	Protein kinase-like (PK-like)	328	619	IPR011009	-
	Pste7g02113	632	Pfam	Protein tyrosine and serine/threonine kinase	347	618	IPR001245	GO:0004672\|GO:0006468
	Pste7g02113	632	FunFam	Wall-associated receptor kinase-like 20	420	632	-	-
	Pste7g02113	632	CDD	TM_EGFR-like	274	307	-	-
	Pste7g02113	632	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	467	479	IPR008271	GO:0004672\|GO:0006468
	Pste7g02113	632	CDD	STKc_IRAK	350	620	-	-
	Pste7g02113	632	Pfam	Wall-associated receptor kinase galacturonan-binding	24	80	IPR025287	GO:0030247
	Pste7g02113	632	Gene3D	Phosphorylase Kinase; domain 1	305	419	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste7g02113	Pste-Chr7	19386210	19389703	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste7g02113	18	632	Receptor kinase-like Gene Family	AT5G02070	51.828	0.0	641

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK_LRK10L-1	Pste7g02113		PK_Tyr_Ser-Thr	1.5e-43	CL0016