Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g02073 ATGTCTTCCGGGACATCCTCGTACTGGTGCTACCGCTGCAGCCGCTTCGTCCGCGTCTGGCGCCAGGACACCGTGGTTTGTCCCGATTGTGACGGCGGATTCATCGAAGAAATAGAACACCCGCCCCGTCCCCTCCATCAGGACCCCCGCCGCCGCCGCTTCCCCGCCGCCGCCATGTACATGATCGGCCAGCGCCCCTCCTCGGACCACACCTCCCGCCCCGCTCTCCGCCGCACCCGCCGCAACGGCGGCGACCGCTCCCCCTTCAACCCGGTCATCGTCCTCCGCGGCGCCTCGGAGGAGGAAAGTCGCGGCTTTGAACTCTTCTACGATGACGGAGCCGGTTCTGGCCTCAGACCCTTGCCACCTAGCATGTCAGAATTTCTGCTGGGATCTGGTTTCGATAGGCTTCTGGAACAACTGTCTCAGATTGAGATCAACGGTATTGGACGGTACGAGCACCCTCCTGCTTCTAAAGCAGCCATTGACTCTTTACCAACCATCGAAATTAACAACACTCATTTAGCCTTGGAGTCTCACTGTGCTGTTTGCAAGGAAGCTTTTGAATTGGGCACTGCTGTTAGGGAAATGCCATGTAAGCACATATACCACCCTGACTGCATATTACCCTGGCTCGCACTTCACAATTCATGTCCCGTTTGTCGCCATGAGTTACCCGCTGATACACCAAATCCAACACAAGGACATAATGTTTCCTTAAACGACAACCACAACGACAACGACAATGTGGGATTGACCATTTGGAGGTTGCCGGGTGGAGGGTTTGCCGTTGGGAGATTTTCCGGTGGGAGAATAGGTGCTGAGAGAGAGCTTCCTGTGGTTTACACTGAAATGGATGGTGGATTTAACAACGGGGGTGAGCCGAGGAGGATTTCTTGGTCTTCTAGAGGGAATGGAGGGAGGGAAAGTGGAGGGTTCAACCGGTTTTTCCGCAATTTGTTTGGTTGTTTCAGAGGTGGGGTTGGAAGTAGTGCTGCTACTCAACCTTCTGCTTCTAGTAGAGACTCTATCAGAGCGACTTCGTCTCGCCCTAGCATGGATCCTTCCCCGCGTTCGCGCAGGACTTGGTCCATGGATGTAAACAGTGGGATGAGAGCGTGGTAG 1125 0.5502 MSSGTSSYWCYRCSRFVRVWRQDTVVCPDCDGGFIEEIEHPPRPLHQDPRRRRFPAAAMYMIGQRPSSDHTSRPALRRTRRNGGDRSPFNPVIVLRGASEEESRGFELFYDDGAGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGIGRYEHPPASKAAIDSLPTIEINNTHLALESHCAVCKEAFELGTAVREMPCKHIYHPDCILPWLALHNSCPVCRHELPADTPNPTQGHNVSLNDNHNDNDNVGLTIWRLPGGGFAVGRFSGGRIGAERELPVVYTEMDGGFNNGGEPRRISWSSRGNGGRESGGFNRFFRNLFGCFRGGVGSSAATQPSASSRDSIRATSSRPSMDPSPRSRRTWSMDVNSGMRAW 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g02073 374 Pfam Protein of unknown function (DUF1117) 250 349 IPR010543 -
Pste7g02073 374 Pfam Ring finger domain 180 222 IPR001841 -
Pste7g02073 374 SMART ring_2 181 221 IPR001841 -
Pste7g02073 374 SUPERFAMILY RING/U-box 161 234 - -
Pste7g02073 374 MobiDBLite consensus disorder prediction 330 374 - -
Pste7g02073 374 CDD RING-H2_RNF126-like 181 222 - -
Pste7g02073 374 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 87 226 - -
Pste7g02073 374 Pfam zinc-ribbon 7 38 IPR039525 GO:0061630
Pste7g02073 374 FunFam E3 ubiquitin-protein ligase RING1-like 143 228 - -
Pste7g02073 374 MobiDBLite consensus disorder prediction 330 366 - -
Pste7g02073 374 ProSiteProfiles Zinc finger RING-type profile. 181 222 IPR001841 -
Pste7g02073 374 MobiDBLite consensus disorder prediction 63 91 - -
Pste7g02073 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 228 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g02073 Pste-Chr7 19051096 19052220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g02073 120 235 C3H Transcription Factor Family AT5G01980 40.517 3.19e-24 102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste7g02073 7 19051096 19052220 Pste8g00778 8 4009136 4011561 ECH
Pste7g02073 7 19051096 19052220 Pste7g02073 7 19051096 19052220 ECH