Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g02006 CTCTGATTCTCCTTCACACAATTCTCCCCTCGCTTTTCTCTTTTCATCTCCAGGGCTATATTTTTATTAACATTTTCTGAAGCGTTTGCCTTTGTGTTAAGTTGCGAGTATAATGGCTTCTTCATTGGATATGTCACTTGATGATAGAATAAAGAACAGAAGTAACAGAGGAAGAGGTAGAGGAGGACGAGGCAGAGCCATATCTGGCCGTGGCCCAAGTGGGGCTCTTAATGGTGGAAGAATGAGTGGTGCTGTTAATAGTAGAAGAATGGCTGGTGCGGCTAATGGTGGAAGAGCAACTGGTGCTGTACGCAGAGGTCCTCTTATGGTTAACACTCGACCATCATCATATGCTATTGCCAAGGCAAGCTCAAAAAATGTGGATGCTTATACATGTGCTTGAGAATCTGATATGCTTAAAAATACCCAATTAAGAGAAGATTCAGCATTATAGAAACTCAAAAGCAAGTGGAATCCCCTTCTTTAGTATTTGTTCCATGGAGAAGCTCATGCTCGAACATTTTGCATCATCAATGCCTTTGTCATAGTTCCATAATATCACAATTAATATGCACCTAAGAGTTGTTTGCTTTTGTTTTGGGGGGCTTTGCTACAGATATCTGATGTGTGCAGGAGTTCTTTGGTGATTCCTGGCATATTATGTGAAGGAGCTTCATTTAGTGTATTTCAAAATGGAGCTCTTACCAGTAGCACAAATGTCATATAACTATAAGTGGGGTTAAATTCTCTAAACCATGCTAATCCATTTCATTTAAAAGAGATGACTTTAAATGTTTGGCTGGTTTTGTGTGGACCGGTGTTTTATTGGATCCTCTTGCTATGTTGGGTTCTACAGTGCAAGAATTCAGTATACTTCCTTAATTCATGGTAATTTGCAACGGAGCTTTTCGCTCAGAATCAGAACTGGAGCTCTCAGTAGTAGCATAGCACCGGTTTACATGCAGTGGGTTGAATTCTTACTCCCATATATCGTCTTTCACCTAGAACATTGATGTTTGAGTACAAGTTCTCTTTTGAATATATATTACCATGGTCAGATCTACTTCGTTAGTAGCGTGTTTTGTTTTTTTTTGGGGATTTTCCTGCTCTGACTAATCTTGAAGAATGGTGAATATCTTTTTTCTGGTCATAAACTGATGTGTTCTTTTGCCACTTTGGAAACTGTTCTGTCCTTTGGCCAGTCTATTCGCAGAACTAGGCCCTTTCCATGGCAGCATGATTTGTTTGAAGATAGCCTAAGAGCTGCAGGGATTCAAGGAGTAGAAGTTGGCACCAAGTTGTATGTTTCCAATTTGGACCATGGAGTGACCAATGAAGACATAAGGGAACTTTTCTCTGAGCTTGGAGAGTTGAAGCGTTATGCAGTTCATTATGACAAAAATGGGCACCCAAGTGGTTCGGCTGAAGTTGTTTATACTAGAAGAAGTGATGCTTTTGCTGCTCTTAAACGATATAATAATGTACTTTTGGATGGAAAGCCCATGAAGATTGAGATTGTTGGTTCCAATGCAGAATTGCCTATAAGTGCTCGGGTGAATGTCACGGGGGTGAATGGACGTAGGAAGAGGACTGTTGTAATGACGCATAGAGGTGGACAAGCTGGAGGTCCTGTTATGCCAAATCGTGGTGCTGGTTGGTCACGCCGGGGTGGCACAAGGAGTGGCAGTGGACGTGGCGGAGGTAGAGGTCGTGGTCGCAACAGAGGTGGAGGTAGAGGTCGTGGAAGAAAGGATAATGTTGAGAAGTCAGCGGAGGAACTTGACAAGGAGCTGGACACCTATCATGCTGAGGCCATGAACATCTCTTAATCGGAAGCTGCAGTTTATTTTGTAATATTAAGATTTGCTTCCTTGTACAAAAGCTCGTTTCCTTCGCGTTACTTTGAATCTCTTACTGCTTGGTGCTTTTAATGTCTTGGTAGAGGCTGAATGATCAACTTCAGGGATTTTTGAAGTTCTGAGATATAGATTATTGTTTGATTTGCGTATTGTTTTATATTATTCTTGATTGCAATATTGAGGCTTACTACTTGCTGGTTATTGCGGTAGGTGATCTAATG 2080 0.413 MCSFATLETVLSFGQSIRRTRPFPWQHDLFEDSLRAAGIQGVEVGTKLYVSNLDHGVTNEDIRELFSELGELKRYAVHYDKNGHPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGSNAELPISARVNVTGVNGRRKRTVVMTHRGGQAGGPVMPNRGAGWSRRGGTRSGSGRGGGRGRGRNRGGGRGRGRKDNVEKSAEELDKELDTYHAEAMNIS 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g02006 223 SUPERFAMILY RNA-binding domain, RBD 45 143 IPR035979 GO:0003676
Pste7g02006 223 CDD RRM_THOC4 46 120 - -
Pste7g02006 223 SMART FoP_duplication_2 150 223 IPR025715 -
Pste7g02006 223 Coils Coil 198 218 - -
Pste7g02006 223 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 116 IPR000504 GO:0003723
Pste7g02006 223 MobiDBLite consensus disorder prediction 151 223 - -
Pste7g02006 223 SMART rrm1_1 47 119 IPR000504 GO:0003723
Pste7g02006 223 MobiDBLite consensus disorder prediction 193 216 - -
Pste7g02006 223 Gene3D - 39 204 IPR012677 -
Pste7g02006 223 Pfam C-terminal duplication domain of Friend of PRMT1 162 217 IPR025715 -
Pste7g02006 223 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 17 220 - -
Pste7g02006 223 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 123 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g02006 Pste-Chr7 18410522 18416428 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g02006 45 120 Eukaryotic Initiation Factors Gene Family AT2G23350 38.158 4.53e-10 57.0