Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g01978 ATGATGAATCACAACTCCCACATCGCCCTCTTCTCTTGTTTCCTCTCTGTGCTCCTCTATGCTCACTCCCAGGATGATGCCTCAGCAATGCTCGCTCTAAGAGACACTCTCAAACCACCCGGGTGGTCCGACCCCAACCCATGTCGTTGGAAAAACGTGGTATGCTCCAAACAAAGTCGGGTCACCCGAATCCAAATAGGCCACCAGGGCCTTCAGGGAACACTTCCGAACGCCACCGTGATCCAGACCCTGACCCAATTGGAACGCTTGGAGCTCCAATTCAACAACATTTCGGGTCCTCTTCCCAGTCTCAACGGTTTGACCTCCCTCCAAGTCCTCATTCTCACCAACAACCAATTCTCTTCCATGCCCAACGACTTCTTCGTTGGTATGTCGGAGCTCCAAAGTGTCGAGATCGACAACAACCCCTTCAAACCTTGGACAATCCCCGACAGCATTGTTAACTGTTCTTCCCTCCAAAATTTTTCTGCAAATTCCGCCAACATTGTCGGAAAACTTCCTGATTTTTTTTCGAGTCTTCCCACGTTGACCCATTTGCACTTGGCCTTCAATAGCCTTGAGGGTGTGTTGCCTTTAAGCTTCTCCGGATCTCAGATTGAGACTCTCTGGCTGAACGGACAAAAGGGTGGTGAAAGTAACTACCTTGGTGGACATGTTGATGTTTTGCAGAATATGACATCGTTGACGCAGGTTTGGTTGCATTCCAATGCTTTTACCGGGCCTCTTCCTGATTTTTCCGGGTTAGTAAGTTTGCAAGATTTGAACTTGAGGGATAATGCTTTCACGGGTCCTGTTCCTGGGTCATTGGTGGGTTTGAAATCGCTTAAAGTTGTAAATTTGACTAATAACTTTTTTCAGGGGGCAGTACCCAAGTTTGGTTCCGGGGTTGAGGTGGATTTGGATTTGAAGGATGATTCTAATAGCTTTTGTTTGCCACGTGGAGGGAAGTGTGATCCTAGGGTGGAGATTCTGCTTTCTGTTGTCAGGAGTTTGGGGTATCCCCAAAGGTTTGCTGAGAATTGGAAGGGGAATGATCCTTGTGCTGAATGGATTGGGGTTACTTGCAATGGTCGTGGGGATATTATTGTTGTTAATTTTGAGAAGATGGGCCTTGAGGGTACTATAGCTCCTGAATTTGCTTTGCTTAAATCACTGCAAAGGCTTGTGCTTGCTGATAATAATCTCACTGGGTCAATTCCAGAAGAGCTAGCTTCTTTGAATGGACTTGTTGAATTGAATGTTGCAAACAATCGGCTTTATGGGAAGATCCCGAATTTTAAGAGCAATGTGGTTGTTACCACTCAAGAGAATAAGGATATAGGGAAAGATAAGCTAAGCCCAGGGCCACGATCATCACCTTTAAGTCCTCTATCACCAAAGTCAGCCGATAAAAAAGGAAGAGACAAAAATAGTGGGAGAAGATCTTCACATGTTGTGGCGATTGTGTTTGCTGTAATTGGTGGTGTGGTGCTGCTTTTGGTTATTGTTTTGTTGGTTTTTTGTTTGTTTAGGATGAAGCAAAAACGGCTGAGCAAGGTACAGAGTCCTAATGCATTGGTTATTCACCCACGGCATTCTCGATCGGATAATGAAAGTGTGAAGATAACGGTTGCAGGTTCAAGTCTCAGCGTTGGTGATATTAGTGGGTTTGGAATGCAAAGCATGGCTAATAGTGAGGCGGGGGATATCCAGATGGGTGAAGCAGGAAACATGGTTATTTCTATACAAGTTCTGAGGAATGTCACTGACAACTTCAGTGAGAAAAATATACTGGGACAAGGAGGTTTTGGAACAGTTTATAAGGGTGAACTGCATGATGGCACAAAGATTGCAGTGAAAAGAATGGAGTCTGGGGCAGTAAGTGGGAAAGGTGCCACGGAATTTAAGTCTGAAATTGCTGTTTTGACAAAGGTTCGCCACCGGCATCTTGTTTCTCTTCTTGGCTACTGCTTGGATGGGAATGAGAAGCTTCTTGTGTACGAGTACATGCCTCAGGGGACATTAAGCAAGCACCTATTTAACTGGATGGAAGAAGGACTGAAGCCACTCGAGTGGAACAGAAGATTGACCATTGCCTTGGATGTGGCAAGGGCTGTTGAGTATCTTCATAGCTTGGCCCATCAAAGCTTTATTCATAGAGACTTAAAGCCTTCAAACATTCTCCTTGGAGATGATATGAGGGCAAAGGTTGCAGATTTTGGCCTTGTGCGTCTTGCTCCAGAAGGAAAAGTTTCCATAGAAACAAAAATTGCGGGAACTTTCGGATATTTGGCACCAGAATATGCAGTTACTGGTCGTGTGACAACTAAAGTTGATGTGTTCAGCTTTGGGGTAATATTGATGGAGCTGATCACTGGAAGAAGAGCACTTGATGATACCCAACCAGAGGATAGCATGCACCTTGTAACATGGTTCCGTAGAATGTATGTAAATAAAGACTCATTCCACAAAGCCATTGACCACACAATTGAGCTCAATGAGGAAACAGTTGGCAGCATTCACACCGTGGCTGAGTTAGCTGGCCACTGTTGTGCAAGGGAGCCATATCAAAGGCCTGATGCGGGTCATGCTGTCAATGTGCTTTCTTCTCTTGTAGAACTTTGGAAACCATCTGATCGAAGTTCTGAAGATGTATATGGCATTGACCTAGACATGTCTTTGCCACAAGCATTGAAGAAGTGGCAGGCTTATGAAGGTAGAAGCCAGATGGAGTCTTCTTCTTCTTCACTCCTTCCTCCCAGCTTGGATAACACTCAAACAAGCATACCTACACGTCCATATGGATTTGCTGACTCTTTCACATCAGCAGATGGTAGGTGATCATGTTTGGTTGTAAATACTTGTAATGGTTCATGGTTTATGGTTTTGTACCGTATTTTCATTCTCATTACTTCTTTCTTGCTTTTCTATTTGAACTAGTTTATCATTTTCATGTTCTAGTCTTTTCCACGGTTAATTTTGTAATTTCTTCAGCGTTTGTTTTCCGCCAAATTGAGAATAGAATATTGTTAGCAGAATATTTATTTCTCATCTTAGGTTCACGTTTTTATCCTTCAGTTAGTATTCAGAAATAATGTGATGGTTGATTTATTCTCATGATATCACATTCTTTTGAACCGTGTCAATCAGTTCCAAG 3157 0.4362 MMNHNSHIALFSCFLSVLLYAHSQDDASAMLALRDTLKPPGWSDPNPCRWKNVVCSKQSRVTRIQIGHQGLQGTLPNATVIQTLTQLERLELQFNNISGPLPSLNGLTSLQVLILTNNQFSSMPNDFFVGMSELQSVEIDNNPFKPWTIPDSIVNCSSLQNFSANSANIVGKLPDFFSSLPTLTHLHLAFNSLEGVLPLSFSGSQIETLWLNGQKGGESNYLGGHVDVLQNMTSLTQVWLHSNAFTGPLPDFSGLVSLQDLNLRDNAFTGPVPGSLVGLKSLKVVNLTNNFFQGAVPKFGSGVEVDLDLKDDSNSFCLPRGGKCDPRVEILLSVVRSLGYPQRFAENWKGNDPCAEWIGVTCNGRGDIIVVNFEKMGLEGTIAPEFALLKSLQRLVLADNNLTGSIPEELASLNGLVELNVANNRLYGKIPNFKSNVVVTTQENKDIGKDKLSPGPRSSPLSPLSPKSADKKGRDKNSGRRSSHVVAIVFAVIGGVVLLLVIVLLVFCLFRMKQKRLSKVQSPNALVIHPRHSRSDNESVKITVAGSSLSVGDISGFGMQSMANSEAGDIQMGEAGNMVISIQVLRNVTDNFSEKNILGQGGFGTVYKGELHDGTKIAVKRMESGAVSGKGATEFKSEIAVLTKVRHRHLVSLLGYCLDGNEKLLVYEYMPQGTLSKHLFNWMEEGLKPLEWNRRLTIALDVARAVEYLHSLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKVSIETKIAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELITGRRALDDTQPEDSMHLVTWFRRMYVNKDSFHKAIDHTIELNEETVGSIHTVAELAGHCCAREPYQRPDAGHAVNVLSSLVELWKPSDRSSEDVYGIDLDMSLPQALKKWQAYEGRSQMESSSSSLLPPSLDNTQTSIPTRPYGFADSFTSADGR 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g01978 946 CDD STKc_IRAK 598 871 - -
Pste7g01978 946 Pfam Protein kinase domain 593 866 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste7g01978 946 ProSitePatterns Serine/Threonine protein kinases active-site signature. 717 729 IPR008271 GO:0004672|GO:0006468
Pste7g01978 946 SUPERFAMILY Protein kinase-like (PK-like) 571 876 IPR011009 -
Pste7g01978 946 PANTHER OSJNBA0070M12.3 PROTEIN 9 946 - -
Pste7g01978 946 FunFam receptor protein kinase TMK1 555 669 - -
Pste7g01978 946 FunFam Receptor-like kinase TMK4 24 322 - -
Pste7g01978 946 Gene3D Ribonuclease Inhibitor 326 451 IPR032675 -
Pste7g01978 946 MobiDBLite consensus disorder prediction 445 479 - -
Pste7g01978 946 ProSiteProfiles Protein kinase domain profile. 592 872 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste7g01978 946 MobiDBLite consensus disorder prediction 909 946 - -
Pste7g01978 946 FunFam Leucine-rich repeat receptor-like kinase 326 450 - -
Pste7g01978 946 SUPERFAMILY L domain-like 55 434 - -
Pste7g01978 946 Pfam Leucine rich repeat N-terminal domain 24 56 IPR013210 -
Pste7g01978 946 Pfam Leucine rich repeat N-terminal domain 328 363 IPR013210 -
Pste7g01978 946 MobiDBLite consensus disorder prediction 909 935 - -
Pste7g01978 946 SMART LRR_typ_2 84 106 IPR003591 -
Pste7g01978 946 SMART LRR_typ_2 180 203 IPR003591 -
Pste7g01978 946 SMART LRR_typ_2 255 278 IPR003591 -
Pste7g01978 946 SMART LRR_typ_2 389 413 IPR003591 -
Pste7g01978 946 SMART LRR_typ_2 107 130 IPR003591 -
Pste7g01978 946 ProSitePatterns Protein kinases ATP-binding region signature. 598 620 IPR017441 GO:0005524
Pste7g01978 946 Gene3D Ribonuclease Inhibitor 23 324 IPR032675 -
Pste7g01978 946 Gene3D Transferase(Phosphotransferase) domain 1 670 888 - -
Pste7g01978 946 SMART serkin_6 592 872 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste7g01978 946 Gene3D Phosphorylase Kinase; domain 1 554 669 - -
Pste7g01978 946 FunFam receptor protein kinase TMK1 670 887 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g01978 Pste-Chr7 18050661 18054360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g01978 64 859 Receptor kinase-like Gene Family AT1G55610 28.944 8.35e-84 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Pste7g01978 Pkinase 6.2e-47 CL0016