Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g01940 AACACAGGGATTCAAAAGAGGCTAGTAGAGCCAATAGTTTTGCAGCACACGGATCGCTGACGTGGCGAAAGATCGTCGAAATCCCGCGTAAACCCGAAACTTCAATTTTTTCGCGATTCGATTTTTATTTGCGTTTTCTCTACACTGCCCCTCCTCGTAACCCTTCTTATCCCCTCCTCTCGCGCCCAAACATCACAACACAACGCAAAGCGCATTTTCTCTCTGCTAAACCCTTGCCGATTTCAACCGAGTCAACTCGCTCTCTCCTATTCTCGCCGCCATGCCGAAGGCTAAAACCGACTCCAAAGCCGCCGATAACCGGTTGAAGCGCAAGGGAGCTGGCGCCGGAAGGAAACAATCGAAGAAAGCTGCTAAGGATCCTAACAAGCCAAAGAGACCTCCGAGTGCTTTCTTCGTTTTCATGTCTGAGTTCAGAGAACAATACAAGAAGGAGCATCCTACTAACAAATCTGTTGCTGTTGTCGGCAAAGCTGGCGGTGACAAGTGGAAATCAATGTCTGATGCTGAAAAAGCTCCCTTTGTTGCCAGAGCTGAGAAGAAGAAAGAGGAGTATGATAAAAGTATCTTGGCCTATAACAAAAAATTGGAGGTAAAGAATTCTGAGGAAGAAGAGTCAGACAAGTCAAAGTCTGAAGTCAATGATGATGAAGAAGATGAGGATGAGGAAGATGATGATGAGTGAATCGGTGGTACAGATGAAGCGTAGTTGGATGTGGGAAAGAAAAGAAGAAATTATTTTGCATAGTTCGGTTTTGCATTGAATAGGATGTTTTCCCAACTCACATCCCATTATGATAATTAGTTTCTAAGTTTTTATTTTGTCTTCACTAGGGTTAGATTAATTTACAGTCAGTAATTAGGGTTCAGTATCATGATCTTGTACTTAAAGTCAATGCTATGATACGTTTCAATTTTATTCTGGAAGAAATTCAACACTCTCTGTCAATTATGTTTTTGTTTGTTTGCTGTCGTTGTGTGGTTGTTTTTTGGATAATAGCATCGTTACTTGGTTCAAGAATTTTAACTCAAGTTGACTTTAACATTTTTTGTATTTGTCTAGACTGTGGCTATGTCCCCACTGGTGTAGCACAGATTCTTTCTGGTTAAACTTCAAACAACGTGCTATATTATAATGTTTTAGTCTCAATTGGCATTTTTTGTTCTTGTATTGAGTATAATTTGATAGATTAATGAATTGTAATTGGTCTTATTAATTAATGAACTCTCAATTAAGATGTGGA 1262 0.3978 MPKAKTDSKAADNRLKRKGAGAGRKQSKKAAKDPNKPKRPPSAFFVFMSEFREQYKKEHPTNKSVAVVGKAGGDKWKSMSDAEKAPFVARAEKKKEEYDKSILAYNKKLEVKNSEEEESDKSKSEVNDDEEDEDEEDDDE 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g01940 140 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Pste7g01940 140 MobiDBLite consensus disorder prediction 105 121 - -
Pste7g01940 140 Gene3D High mobility group box domain 21 135 IPR036910 -
Pste7g01940 140 SUPERFAMILY HMG-box 25 107 IPR036910 -
Pste7g01940 140 CDD HMG-box_AtHMGB1-like 38 98 - -
Pste7g01940 140 Coils Coil 88 108 - -
Pste7g01940 140 Coils Coil 112 132 - -
Pste7g01940 140 Pfam HMG (high mobility group) box 37 106 IPR009071 -
Pste7g01940 140 SMART hmgende2 36 107 IPR009071 -
Pste7g01940 140 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 4 138 IPR031061 -
Pste7g01940 140 MobiDBLite consensus disorder prediction 1 19 - -
Pste7g01940 140 MobiDBLite consensus disorder prediction 1 43 - -
Pste7g01940 140 MobiDBLite consensus disorder prediction 105 140 - -
Pste7g01940 140 MobiDBLite consensus disorder prediction 122 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g01940 Pste-Chr7 17694238 17696170 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Pste7g01940 HMG_box 3.3e-22 CL0114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste7g01940 7 17694238 17696170 Pste7g01940 7 17694238 17696170 ECH