Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g01938 AGAGAATGGTGAGTGATAAATAGTGAAAATAGAAAGTTAAGCTGTGGAGAGAATCGAAGAAAAGGAAGACTCATCGCACACACAAGAGTGTCCACGTGTTCGTGTTCGTGTTCGTGTTCAGGTTCCTAGCATCGCATTGTTTAGCATTCGCCATTGTAAGCAAGTCGTCAAATTCTCGACACTTCAGAGAGAAAAAGAAAGAGAAAGAGAAAGAGAGAGAGCATCTTCTTCTGCATTCTTACCTCCATCTATCATTTTGCTGTTAATGATAAGGTTCCAATTATTTGAAACCCAAGGAAGGACTCTTTTCTGTGTCTCTTGTATGCCATTCTCTCTTCGATGAAACTACAACATGACAATGGAAGAAGAGTCCTCGGCAGCAGTCCCATTTGACAGAGCTATTGAACAGGCAATTGTATCTATCAAGAAAGGTTCATATTTACTTAAGTGTGGTCGTAGAGGAAAACCGAAGCTCTGTCCTTTCAGACTTTCTCAGGATGAGAAAAATTTGATTTGGTATTCAGGACAGCAAGAGAAGCATTTGCGGTTGAGTGTTGTTACAAAAATTGTTCAAGGACAAGAAAATATAAGGTCCCAGAGGCAAAATGAATCCGAAACGGAGTGCCATTCATTTTCATTAATCTATGCCAATGGTGAACGTTCTCTTGATCTGATATGCAAAGACAAAGCGCAAGCTGCTTCTTGGTTTCTTGGCTTGAAAGCTGTGATTTCTAGGTGTCAACATCCTAGAGCTTTTAGTAGTTTAAGAAGTTGCAAAGGGGTGCAGAGTTGTGTTAGTAGTCCTGCTGGAATCTTGAGAAGAAAGAAAAATCTTGGCCTTTTGGAGGATAGCTCTCAGTTCACTCAGGTTTCATACATCTTTGTTAGGTCATCTATATCTAATGAGAATCTTCTGTGGTTATCTCACATTTATCAATTTCTCCCAAAAAAAGAAAAACAACAAAGATTTTGTCAGGGGCATAAACGTAACTTTGTTGTTATTATTTTGAAGGTACATAGCTTATGTGCAAGTCCTACTTTGTCACTTTCCGATAGGTGCTTTTCTGATGGTTTGTCATGTACATCTGATAACTTTTATTCATCGGCATCTTTCCTCTCCAGCACTCATGGCATGACAGATAATTCAGTGCCAAGTTCTCCATACATTGATCCTAATATCCGTAGCAACATTGAATCAACCCGCATTGATAAGGAGCACAAGAAGAATTTATCCTATAGGTATCTAATGCATTCTAACTCCCCACGTGTAGGAAAAAATAATGTATTGAAAGATGTAATGATATGGGGTGGAGGCATTGGATGTCTTGTAGGGATTGTGAATGAAAGGTTTGTTCAACCTGGAATTTATTCTTTAGTGCCAAAGTTACTAGAGTCCACTGCAATGTTAGATGTACACAGCTTAGCTTTAGGAGGAAAACATGCTGCCTTGGTTACAAAACAAGGGGAAGTGTTTTGCTGGGGTCAAGGGAAGTGGGGAAGACTGGGGCAGAAAATTGATATGGACATTAGCTCCCCCAAAATAGTTGATTCTCTTAATGGTCTTCATGTAAAACATGTTGCTTGTGGTGAGTATCATACATGTGCATTGACAGATTCTGGTGAAGTATATACTTGGGGGAATGATGTTTGTTGTGCAGATTTGTTTAATGAAGGGAGAACTAGAAGTCAGTGGATACCCCAAAAACTTAATGGTCCCTTAGATGGTATTAGTATCTCAAGCATTGCTTGTGGAGAATGGCATACTGCAATAGTCTCTAGTTGTGGGAGGTTGTTTACTTATGGAGATGGTACATTTGGGGTTCTTGGCCATGGTGATCTTCGGAGCTATTCAAGTCCAAAAGAAGTTGAATCTCTTAGTGGTCTTCGGGTGAGGTCTGTTGCTTGTGGATCATGGCATACAGCTGCTATTGTTGAAGTTATGTTTGACCGGTTTAGGTATAATAGTGCCAGCGGTAAGTTGTTTACATGGGGTGATGGAGATGAAGGGAGGCTTGGTCATGCTGATAATGGAAGCAGGCTTGTACCAACATGTGTTACACAACTTGTTGACTATGATTTTGTTCAAGTTTCATGTGGAAGAATGCTGACTGTAGCACTCACTAACATGGGGAAAGTTTTTGCAATGGGAAGTGCCAAATTTGGACAACTAGGAAATCCATATGCCAGGGATAAAGCAGTCATGGTTGAAGGACAACTCAAACAAGAGTTTGTTAAAGTGATATCAGCTGGTTCATATCATGTCGCTGTTTTGACTTCTGCAGGAAGTGTTTATACATGGGGCAGGGGTGAAAATGGCCAACTGGGGCTAGGTGATACTGAAGACAGATACACACCTTGTTTTGTTGAGGCTCTAAGAGACAGACAGGTAAATACTATAATTTGTGGTCCAAGCTTCACAGCTGCAATCTGTTTACACAAACCTATTTCTATTAGTGACCAGTCCACTTGTAGTGGTTGTAGGTTGCCTTTTGGGTTCACAAGGAAGAAGCATAACTGTTATAGTTGTGGTCTTTTGTTCTGCGGTGCTTGTAGTGGTAAAAAGATTTTAAATGCACCTTTGGCCCCTAGTAAGAGCAAGGCTTTTCGGGTTTGTGATCAATGTTTTGATAAACGACAAGGAGGTACACATTCAGTAATGACATCAAACTCCAGAAATTACAACACTCAGCAGTTGCTGAAGCATCAACCCAAAATTGCTGATGTGACTGAAGATAGGGGAGAGACAACTGTGACACAAGGTCCTTTGTTATCTCTTGGTCAATCATGTTACAGGAAAAGCATGCCAAGTGGACGTAAGGATTGGAAAAACCATCAAGAAAACCAACAGGATGTAAAAGATAGTTCATCTATGCTAGGTGGAATGCCACAGTGGGGGCAAGTTCCATGCCCTGCCATATTTAAAATCAATTGTACAGAAAATCCAGTTGTCTCTTCATCCAAAAATAAATTAGGCACAATTTCTCCCGTCAACGTGGAATCTATACCTTACAACTTATCTAATGCAGAGACAGACACAGCAAAGTCTGACAATGTGCTCCTTGAAGAAATTCATAGGCTGAGAGCTGAGGCTAAGAGACTTGAAGAGCAATGTGAGCTCAAAAACCATAAAATACAAGAGTGTCAACAAAAAATTGATGAGAGTTGGTTTGTGGCAAGGGAGGAAGCTGCTAAGTGCAAGGCAGCAAAAGAAGTCATAAAAGCTTTAGCATTAAGGCTTCATACAATATCAGGTAAAGATAATGTTGGACACGAAGGAAAAGTTGGGCCGAATGAATTTGTGCCTAATGTGGCACCTATACATACAGATATGAAGAGTCCAAGAGATGGAAATGTGGATAGTCTATCCAACTCCCCTATAGTATTCTCTGACACACTAAAATCCAAATTTGGGAGAAGTTTGTTCCCCAAAAGTGATAATTCTAACTTAAATAGAACAGAATCTCAACAAGACAATATCGACGGCATGAAGGTGGAATGGGTAGAACAGTATGAGCTTGGTGTTTACATCACATTTACAACCTTGCCATGTGGGAAAAAAGGCCTTAAGCGAGTGAGATTTAGTCGAAAAAGATTCTCAGAGAAGGAAGCTGAAAGATGGTGGGAAGAGAATCAAGTCACAGTGTATCAAAAGTATGGGATTGAAGGATATATCAACACTAGCCAAAGTCAGGTGAAAGGCTAATTTTTTACCTGCTATATTCTTCTCTAGCAATTTTCTCCTATAGTTCTTATTGGGAAAGAGGTGATGTTGGCTTCAAGCCTGAAAGAAAGATCAAGTGTATAGTCACAAATTATAGTGTGTCTTTTGTTCATGAGTATCTTGAGGGCATTCATTCCAGTGTACAGTTACAAATAACAATGTGTCTCTTAATTTTGTTTATTCTATCTTAGCATTGTAGATATTCC 3927 0.3978 MTMEEESSAAVPFDRAIEQAIVSIKKGSYLLKCGRRGKPKLCPFRLSQDEKNLIWYSGQQEKHLRLSVVTKIVQGQENIRSQRQNESETECHSFSLIYANGERSLDLICKDKAQAASWFLGLKAVISRCQHPRAFSSLRSCKGVQSCVSSPAGILRRKKNLGLLEDSSQFTQVSYIFVRSSISNENLLWLSHIYQFLPKKEKQQRFCQGHKRNFVVIILKVHSLCASPTLSLSDRCFSDGLSCTSDNFYSSASFLSSTHGMTDNSVPSSPYIDPNIRSNIESTRIDKEHKKNLSYRYLMHSNSPRVGKNNVLKDVMIWGGGIGCLVGIVNERFVQPGIYSLVPKLLESTAMLDVHSLALGGKHAALVTKQGEVFCWGQGKWGRLGQKIDMDISSPKIVDSLNGLHVKHVACGEYHTCALTDSGEVYTWGNDVCCADLFNEGRTRSQWIPQKLNGPLDGISISSIACGEWHTAIVSSCGRLFTYGDGTFGVLGHGDLRSYSSPKEVESLSGLRVRSVACGSWHTAAIVEVMFDRFRYNSASGKLFTWGDGDEGRLGHADNGSRLVPTCVTQLVDYDFVQVSCGRMLTVALTNMGKVFAMGSAKFGQLGNPYARDKAVMVEGQLKQEFVKVISAGSYHVAVLTSAGSVYTWGRGENGQLGLGDTEDRYTPCFVEALRDRQVNTIICGPSFTAAICLHKPISISDQSTCSGCRLPFGFTRKKHNCYSCGLLFCGACSGKKILNAPLAPSKSKAFRVCDQCFDKRQGGTHSVMTSNSRNYNTQQLLKHQPKIADVTEDRGETTVTQGPLLSLGQSCYRKSMPSGRKDWKNHQENQQDVKDSSSMLGGMPQWGQVPCPAIFKINCTENPVVSSSKNKLGTISPVNVESIPYNLSNAETDTAKSDNVLLEEIHRLRAEAKRLEEQCELKNHKIQECQQKIDESWFVAREEAAKCKAAKEVIKALALRLHTISGKDNVGHEGKVGPNEFVPNVAPIHTDMKSPRDGNVDSLSNSPIVFSDTLKSKFGRSLFPKSDNSNLNRTESQQDNIDGMKVEWVEQYELGVYITFTTLPCGKKGLKRVRFSRKRFSEKEAERWWEENQVTVYQKYGIEGYINTSQSQVKG 1116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g01938 1116 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 61 963 - -
Pste7g01938 1116 ProSiteProfiles BRX domain profile. 1047 1102 IPR013591 -
Pste7g01938 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 371 422 IPR000408 -
Pste7g01938 1116 PRINTS Chromosome condensation regulator RCC1 signature 423 439 IPR000408 -
Pste7g01938 1116 PRINTS Chromosome condensation regulator RCC1 signature 582 600 IPR000408 -
Pste7g01938 1116 PRINTS Chromosome condensation regulator RCC1 signature 639 660 IPR000408 -
Pste7g01938 1116 PRINTS Chromosome condensation regulator RCC1 signature 464 480 IPR000408 -
Pste7g01938 1116 PRINTS Chromosome condensation regulator RCC1 signature 373 389 IPR000408 -
Pste7g01938 1116 PRINTS Chromosome condensation regulator RCC1 signature 354 367 IPR000408 -
Pste7g01938 1116 PRINTS Chromosome condensation regulator RCC1 signature 480 494 IPR000408 -
Pste7g01938 1116 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 700 762 IPR017455 -
Pste7g01938 1116 MobiDBLite consensus disorder prediction 818 832 - -
Pste7g01938 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 593 643 IPR000408 -
Pste7g01938 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 541 592 IPR000408 -
Pste7g01938 1116 Gene3D - 16 133 IPR011993 -
Pste7g01938 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 644 695 IPR000408 -
Pste7g01938 1116 Pfam Transcription factor regulating root and shoot growth via Pin3 1047 1101 IPR013591 -
Pste7g01938 1116 Pfam FYVE zinc finger 702 760 IPR000306 GO:0046872
Pste7g01938 1116 CDD PH_PLC_plant-like 15 127 - -
Pste7g01938 1116 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 516 526 IPR000408 -
Pste7g01938 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 478 529 IPR000408 -
Pste7g01938 1116 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 698 772 IPR013083 -
Pste7g01938 1116 SUPERFAMILY PH domain-like 16 126 - -
Pste7g01938 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 423 477 IPR000408 -
Pste7g01938 1116 Pfam Regulator of chromosome condensation (RCC1) repeat 478 526 IPR000408 -
Pste7g01938 1116 Pfam Regulator of chromosome condensation (RCC1) repeat 540 589 IPR000408 -
Pste7g01938 1116 Pfam Regulator of chromosome condensation (RCC1) repeat 644 692 IPR000408 -
Pste7g01938 1116 Pfam Regulator of chromosome condensation (RCC1) repeat 371 419 IPR000408 -
Pste7g01938 1116 Pfam Regulator of chromosome condensation (RCC1) repeat 422 473 IPR000408 -
Pste7g01938 1116 SUPERFAMILY RCC1/BLIP-II 314 696 IPR009091 -
Pste7g01938 1116 Pfam Pleckstrin homology domain 18 124 IPR001849 -
Pste7g01938 1116 Coils Coil 899 933 - -
Pste7g01938 1116 SUPERFAMILY FYVE/PHD zinc finger 701 773 IPR011011 -
Pste7g01938 1116 SMART fyve_4 694 763 IPR000306 GO:0046872
Pste7g01938 1116 Gene3D - 536 697 IPR009091 -
Pste7g01938 1116 Gene3D - 301 435 IPR009091 -
Pste7g01938 1116 Gene3D - 436 533 IPR009091 -
Pste7g01938 1116 MobiDBLite consensus disorder prediction 818 838 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g01938 Pste-Chr7 17684385 17695577 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g01938 1043 1106 Major Intrinsic Protein MIP AT1G31880 46.875 6.64e-12 66.6