Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g01903 ATGTTATTATCGTTGTTGTTCCTTGTCTCATGTTGGCAACTCGCAGGGTCTCCCCATCCTGGTTTTCGCACCCTCTTCGATCGTTCTAGGGTTAGGGTTTGCTTCCCTTTTCGATTCGATTTGTTCAATTCCGAGAGCGTGAAACTGACGCGCCTCCCGATAGAAGCCATGGGAGGTGACAGTGCGGTTGAGGAATCCGAAGGCTCCAATTTCAACATTAACGTCCGTTGCTCCAACGGTTCCAAATTTTCCGTTCAGATTGCCGTCGATTCCACCGTCAGTTCCTTCAAGAATCTCGTCGCTTGCAACTGTGACATCCCCGCTGAACAACAACGCCTCATTTACAAAGGTCGCATCTTGAAGGACGATCAAACCCTCCGAAGCTATGGTTTGGAGGCAGATCACACTGTTCATTTAGTTCGTGGCTTTGCACCTGCCAGTACAACTGGAGGGACCAATACTAATAGCACCAATACCGGTACCACCAATACCAGCAATACCACCACAAATAATGCCAGAGGTAGTGGTGTGAATGGAGGTGGGGGTTTAGGAGGGCTTGGTGTAGGAGCTTCACTATTCCCTGGATTAGGTATCAATGGGACTGGGGGCAATGGTTTATTTGGCGAGGGATTTCCTGATCTCGAACAAATGCAGCAACCATTTATTTCAAATCCCAATTTAATGAGAGAAATAATGAATTCACCTGCCATGCAGAATCTAATGAATAATCCTGAGATAGTGCGGAATCTTATAATGAATAATCCACAGATGCAAGAGCTCATGGATCGAAACCCTGAGCTAGCACACATACTTAATGATCCCAGCACTCTCCGCCAGACCCTTGAAGCTACAAGAAACCCTGAGATCATGCGTGAAATGATGAGAAATACGGATAGAGCAATGAGCAATATTGAATCTTCTCCTGAGGGATTCAACATGTTGAGGCGTATGTATGAAAATATCCAAGAACCATTTTTGAATGCCACTACAATGGCTGGTAATACAGGAAATAATAATGCAGCAATTTCAGGGACTAATGGTGGCCATGTGAGGGATCAGTCAATTAATCCCTCAACTACTAGCTCTGAAGCAACTGCTGGTTCTCCCTTACCCAATACTAACCCACTTCCAAATCCTTGGTCCTCTACTGGAACTGGAGATGCTCAAAATAACACCAGACGGGCGTCGACCACTGGTGTGGATGCCAGGCAGCAAGGACCTACTGGCTTAGGAGGGCTTGGTCTGCCAGACCTTGAAAACATGCTGGGTGGCAGTGCCATGCCAGATGCTGCTTTATTGACCCAGTTAATGCAAAATCCAGCTATCTCACAAATGATGCAAAGTATGCTTTCCAACCCACAAACTTTGAATCAGCAACTCTTGTCTTTCCAGCAAGCTCTTCTGTCTCAGCTTGGTCAGCAGCAATCAACACGGGAATCTGGTGGTCAAACTGGTGGAGGCACTGTAGTTCATCAGTTATACTTTGATGACTTCCTTTGCTATGATATTTTGGTTGTTCATAAATCACAAAAACTGGGTGTGGGTGGTAAGTTAGCGGTTGCTGTTTTGGATGATGCAACTGCCGTTTGA 1590 0.4591 MLLSLLFLVSCWQLAGSPHPGFRTLFDRSRVRVCFPFRFDLFNSESVKLTRLPIEAMGGDSAVEESEGSNFNINVRCSNGSKFSVQIAVDSTVSSFKNLVACNCDIPAEQQRLIYKGRILKDDQTLRSYGLEADHTVHLVRGFAPASTTGGTNTNSTNTGTTNTSNTTTNNARGSGVNGGGGLGGLGVGASLFPGLGINGTGGNGLFGEGFPDLEQMQQPFISNPNLMREIMNSPAMQNLMNNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENIQEPFLNATTMAGNTGNNNAAISGTNGGHVRDQSINPSTTSSEATAGSPLPNTNPLPNPWSSTGTGDAQNNTRRASTTGVDARQQGPTGLGGLGLPDLENMLGGSAMPDAALLTQLMQNPAISQMMQSMLSNPQTLNQQLLSFQQALLSQLGQQQSTRESGGQTGGGTVVHQLYFDDFLCYDILVVHKSQKLGVGGKLAVAVLDDATAV 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g01903 529 MobiDBLite consensus disorder prediction 337 404 - -
Pste7g01903 529 PANTHER UBIQUILIN 71 478 IPR015496 -
Pste7g01903 529 SMART ubq_7 71 142 IPR000626 GO:0005515
Pste7g01903 529 MobiDBLite consensus disorder prediction 337 416 - -
Pste7g01903 529 SMART CBM 200 241 IPR006636 -
Pste7g01903 529 SMART CBM 406 459 IPR006636 -
Pste7g01903 529 SMART CBM 254 293 IPR006636 -
Pste7g01903 529 CDD Ubl_Dsk2p_like 72 143 - -
Pste7g01903 529 MobiDBLite consensus disorder prediction 146 173 - -
Pste7g01903 529 Gene3D - 60 154 - -
Pste7g01903 529 ProSiteProfiles Ubiquitin domain profile. 71 140 IPR000626 GO:0005515
Pste7g01903 529 Gene3D - 249 307 - -
Pste7g01903 529 Pfam Ubiquitin family 73 140 IPR000626 GO:0005515
Pste7g01903 529 FunFam Ubiquitin domain-containing protein DSK2b 251 307 - -
Pste7g01903 529 FunFam Ubiquitin domain-containing protein DSK2b 68 154 - -
Pste7g01903 529 SUPERFAMILY Ubiquitin-like 68 158 IPR029071 -
Pste7g01903 529 MobiDBLite consensus disorder prediction 144 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g01903 Pste-Chr7 17412709 17421777 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g01903 73 140 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 32.353 4.48e-07 47.4