Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g01893 ATGCCTGCTGTCACATCACTTCAAATCAACGGTCCACATTTTCAGTGGCTGTCAATTTGTTGGGATGTTGTGGTGTTTGGATGTGGGTTTTGTTTAATTTTGTCAAGGCTGTTGTGTTTTTGTGGGTGTGAACTATGGAGTGAGTGCATTGGCATCATCATGGTGGAGGAGGATGTTGGGGAATGCTTGTGCAATGGCTTGAAGCAAATTGAGGAGAAAAAACAAAACAAGGTAAAGCTTGATGATATGAAGCTTTCAACATCAGGGTTGGGGCAGCAGGGACATGACGGAGGGGAGAAGAAATGTCTGAATTCTGAGTTATGGCATGCATGCGCGGGGCCCCTGGTGTCCCTACCAACTGCAGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATAGTGAGCAGGTTGCTGCCACAACTAACAGAGAAATTGATGGACACATTCCCAATTACCCTAGCTTGCCACCCCAGTTGATATGCCAACTTCATAATGTCACAATGCATGTGGATGTTGAAACGGATGAAGTATATGCTCAAATGACATTGCAGCCATTGACTCCGCAAGAGCAGAAGGATACATTTCTTCCTATGGAATTGGGAATTCCAAGTAAGCAGCCATCAAATTATTTTTGCAAGACTTTAACAGCCAGTGACACCAGCACACATGGGGGATTCTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTCCCTCCCCTGGATTTTGCCCAGCAACCACCAGCGCAGGAACTAATTGCTAGGGATCTTCATGATGTTGAATGGAAATTTCGACATATTTTTCGGGGACAGCCAAAGCGACACCTTCTTACTACAGGCTGGAGTATATTTGTCAGTGCCAAGAGACTTGTGGCTGGAGATTCTGTGCTTTTCATATGGAATGAGAAGAATCAGCTTCTTTTGGGAATACGTCGTGCCAATCGACCACAAACTGTAATGCCATCTTCAGTTCTATCCAGTGATAGCATGCATATTGGACTTCTTGCAGCTGCTGCCCATGCTGCAGCAACCAATAGCTGTTTTACTGTGTTTTATAATCCAAGGGCTAGTCCATCTGAGTTTGTCATACCACTTTCAAAATACATCAAAGCTGTGTACCATACACGTATTTCTGTTGGCATGCGTTTCAGGATGCTTTTTGAGACTGAAGAGTCAAGTGTCCGCAGGTATATGGGTACAATAACTGGCATAAGTGATTTGGATTCTGTTCGGTGGCCAAATTCTCATTGGCGCTCTGTCAAGGTTGGTTGGGATGAATCAACTGCTGGAGAGAGACAACCCCGGGTATCTCTGTGGGAAATTGAGCCATTAACAACATTCCCGATGTATCCTTCATTATTTCCCCTCAGACTGAAGCGTCCATGGCATCCTGGCACCTCGTCTTTGCATGACGGTAGAGATGAAGCAAGTAATGGACTAATGTGGCTGAGAGGTGGACCTGTGGACCAAGGTCTCAATTCCCTAAATTTTCAAGGAGCTGGTATGTTACCCTGGATGCAGCAGAGATTGGATCCAACTTTACTGGGAAATGATCAGAATCAACAGTACCAGGCTATGTTGGCAGCTGGTTTGCAGAACCTAGGTAGTGGATATCTCATGAAGCAACAAATGATGAATTTTCAGCAACCTTACCACTATCTTCAACAACCAGGAAACAGCAATTCTCCTTTGCAACTTCAGCAACAGCAACCAATTCAACAATCTGTGTCTTCTAACATGTTGCAGCCACAAGCCCATGTATTGACAGAGAACCTCTCTCAGCACCTCCTTCAGAAGCCACATAACAATCAAGAAGTCCAAGCACAACAGCAGCAACATACTTATCAAGACTCACTCTTAATTCCGAGTGATCAGCTCCATCAGAGACAACACTCTGGCGTACCTTCACCATCATATTCAAAACCGGATTTCTTGGATTCAAGCATGAAGTTCCCTGCTTCTGTTTCCCCTGGACAAAACATGCTTAGTTCACATTGTCCTGAAGGAAGTAGCACTCTCTTGAATTTATCAAGGAGTGGTCAGTCTTTGCTGACTGAACAGTTACCCCAACAGCAATGGACTCAAAAGTATGCACCTGTGCAGGTCAATGCCTATGGAAGCACTGTGTCTCATGCACAATATTCTGGAAAAGATTCTGCGATAGTGCTACCACATTGTAACTCAGATGCTCAAAATCCTATACTTTTTGGTGTGAATATCGATTCATCTGGCCTTCTCCTCCCCACAACTGTCCCTGGTTTCACCACCTCGTCTGCTGACACTAATTCATCAACCATGCCATTAGGAGATTCTGGTTTCCAGGGTTCTCTATATGGTTGCATGCAAGATTCATCAGAGTTGTTGCAAAGTGCAGGGCATGTTGACCCACAAAACCAGACTCAAACCTTTGTTAAGGTTTACAAATCAGGGTCAGTTGGACGCTCACTGGACATATCCCGGTTCAGTAGCTACCATGAACTGCGCGAGGAGTTGGCTCAGATGTTTGGAATTGAGGGAAAGTTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTGTTCGTTGACAGGGAGAACGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTTGTCAATAATGTTTGGTATATCAAAATACTTTCACCGGAGGACATTCAAAAAATGGGGGAACAAGCGGTAGAATCCCTTGCTCTAGGTTCAGGACAACGGCTAAATGGCACTGGTGCTGAGTCTCAGGACATTGTTTCTGGACCACCGTCAATTGGATCACTTGAGTACTGAGATATTGAAACATGTCTTCCTTCAGACCCCTTGGTCAATAGAATTTCTCTACATGTAATACTTCTATTGGAATATGTTATGTATGACCAGTTCCCTCCTTTGCCATCTTTTATTATTTCTATCACCATGGAAGGAAATATACATTATGATAAAACTTTTGCCAATTTGAACTTTGGGGCACTGCAAGCTTGAGTTAGTGTTACTGCTATTTTAGCATAATATTTTATCATATTAAACTTTTGCCTGAACTAATGTACTCTAGATAGGAAACTACTATATTTGTCATTCAAACCATCTCCTACCATATACCATCATGAGATGTCTCTTAA 3107 0.4384 MPAVTSLQINGPHFQWLSICWDVVVFGCGFCLILSRLLCFCGCELWSECIGIIMVEEDVGECLCNGLKQIEEKKQNKVKLDDMKLSTSGLGQQGHDGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREIDGHIPNYPSLPPQLICQLHNVTMHVDVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFAQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSLHDGRDEASNGLMWLRGGPVDQGLNSLNFQGAGMLPWMQQRLDPTLLGNDQNQQYQAMLAAGLQNLGSGYLMKQQMMNFQQPYHYLQQPGNSNSPLQLQQQQPIQQSVSSNMLQPQAHVLTENLSQHLLQKPHNNQEVQAQQQQHTYQDSLLIPSDQLHQRQHSGVPSPSYSKPDFLDSSMKFPASVSPGQNMLSSHCPEGSSTLLNLSRSGQSLLTEQLPQQQWTQKYAPVQVNAYGSTVSHAQYSGKDSAIVLPHCNSDAQNPILFGVNIDSSGLLLPTTVPGFTTSSADTNSSTMPLGDSGFQGSLYGCMQDSSELLQSAGHVDPQNQTQTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAVESLALGSGQRLNGTGAESQDIVSGPPSIGSLEY 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g01893 925 FunFam Auxin response factor 794 888 - -
Pste7g01893 925 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 99 888 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pste7g01893 925 MobiDBLite consensus disorder prediction 903 925 - -
Pste7g01893 925 CDD B3_DNA 209 310 IPR003340 GO:0003677
Pste7g01893 925 Gene3D - 795 888 - -
Pste7g01893 925 SUPERFAMILY CAD & PB1 domains 794 873 - -
Pste7g01893 925 ProSiteProfiles PB1 domain profile. 799 883 IPR000270 GO:0005515
Pste7g01893 925 FunFam Auxin response factor 208 312 - -
Pste7g01893 925 ProSiteProfiles B3 DNA-binding domain profile. 210 312 IPR003340 GO:0003677
Pste7g01893 925 Gene3D - 374 446 - -
Pste7g01893 925 SMART B3_2 210 312 IPR003340 GO:0003677
Pste7g01893 925 Pfam Auxin response factor 336 419 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pste7g01893 925 FunFam Auxin response factor 374 446 - -
Pste7g01893 925 SUPERFAMILY DNA-binding pseudobarrel domain 194 339 IPR015300 -
Pste7g01893 925 MobiDBLite consensus disorder prediction 551 576 - -
Pste7g01893 925 Pfam AUX/IAA family 795 883 IPR033389 -
Pste7g01893 925 Pfam B3 DNA binding domain 210 311 IPR003340 GO:0003677
Pste7g01893 925 MobiDBLite consensus disorder prediction 903 917 - -
Pste7g01893 925 Gene3D - 208 311 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g01893 Pste-Chr7 17308896 17316884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g01893 180 897 B3 DNA Binding Superfamily AT5G37020 68.544 0.0 928
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pste7g01893 AUX_IAA 8.7e-08 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste7g01893 7 17308896 17316884 Pste7g01893 7 17308896 17316884 ECH
Pste7g01893 7 17308896 17316884 Pste8g01553 8 8829234 8840515 PCT