Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g01863 CTTTGGGACCTTACTGTTCGCTTCCTCCTCTCGCCGCCATGGACACCTTGCCCTCCGTTCTCAAGAAATACTTTGGGTTTTCGGATTTTCGACCTTATCAAAGAGAAGTTATTGAGAAAATTATTGAGAAAAGGGATAGTTTGGTAGTTATGGCTACTGGTAGTGGGAAGTCCTTGTGCTATCAGGTACCTCCTTTGGTGGTTAAAAAGACTGGGATAGTTGTGAGCCCTCTGATATCATTGATGCAAGACCAGGTGATGGCTTTGAAAGAACGGGGCATCAAAGCTGAATATCTTGGAAGTGCTCAGAAGGATTTCACTGTGCACTCTAAAGCTGAACGTGGTCAATTTGACATTCTGTTCATGACTCCTGAGAAGGCATGCTCAATTCCTAGCAGTTTCTGGTCCAACTTACTAAAGGCTGGAATTAGTCTTTTTGCCGTTGATGAAGCCCATTGCATATCAGAATGGGGTCATGATTTTAGAGTGGAATACAAGCTTTTAGACAAGTTACGTGAGGTTTTGCTAGATGTTCCTTTTGTTGGTCTCACTGCAACTGCTACTGAAAAGGTCCGATTTGACATCATCAATTCCCTGAAGATGAATAATCCTTATGTGACAGTTGGTTCATTTGATCGCACAAATCTTTTCTATGGTGTCAAACTATTAAACCGTGGACAATCTTTTATTGATGAGCTTGTGCAAGAAACTTCAAATGAAGTCACTAGTGGGGGTTCAACTATAATTTATTGCACTACAATCAAAGATGTAGAGCAGATATTCAAGTCATTTGTTGAAGCAGGCATTGAGACAGGCATGTATCATGGCCAAATGAATGTAAAAGCTCGAGAGGAGTCTCATAGATTATTTGTTAGTGATGAACTACAAGTCATGGTGGCCACCATTGCCTTTGGCATGGGCATAGATAAACCTAACATAAGACAAGTAATTCACTATGGTTGCCCTAAAAGTCTAGAGTCCTACTACCAGGAAAGTGGACGATGTGGTAGAGATGGTATAGCTTCTGTTTGTTGGCTTTACTACACAAGAAGTGACTTTGCAAAGGGAGACTTTTATTGTGGAGATGTAAAATCAGTACGTGCATCTAGGAGTTATCCTGTTCTCTGTCTAACATCTGAATCTCCAATGTACCAGGAAAAACAAAGAAAAGCTGTCATGGAGTCATTGCTGGCTGCTGAACACTATTGTGTTCTGACAACCTGCAGAAGAAAGTTCCTGCTTGAATACTTTGGGGAAAAATTTTCTGCTGATAGATGTGGGAACTGCGATAATTGCAAAGGCTCAAAGAAGGAGCGTGACATGTCAAGAGAAGCATTTCTTCTAATGGCTTGCATTCATTCATGCGGAGGAAGATGGGGCCTTAATATGCCCATTGATGTCCTACGTGGGTCTCGAGCCAAGAAAATTCTTGATTCTCAATTTGACCAGCTTCCACTTCATGGACACGGGAAAAATTATCCAGCAAATTGGTGGAAAGCACTTGGACATCAATTGATTTCTCAAGGTTATTTGAAGGAGTTTGTTAGTGACATATACAGAACTATAAGTGTCGGCTCAAAAGGAGAGCAATTTTTGGCCTCTTCTACACCAGATTATCAACCTCCCTTGGTTTTGACATTGACTGCTGAAATGGTTGGAGAAGAAAATGGAAACACACAAGAAGAATTCAAAACTTTATCCACTTCAGAATCAGAGGGTTTTTCAGAGGCTGAGGGACAGCTCTACCAAATGCTTTTGAAAGAAAGATTAAAGCTTGCAAGAAGTGTTGGAACAGCTCCATATGCCGTATGCGGTGATCAAGCGATAAAACAAATTGCGTTGACAAGACCATCTACAAAAGCAAGACTAGCAAACATTGATGGAGTGAATCAGCACCTAGTAACGAAATATGGAGATCATTTCCTTCAAGCTATTCAGAAACTGTCACAAGGATTAAACCTAACATTGGATGGAGAACCAAGGATTGCAACAGCAAGTTTGCAAACTAAAGAAGTAAGGAAAGTATCTCCAGCAACCAACACCCGGAAGTTGACATCGGCAAAGTTTGAAGCATGGAAAATGTGGCATGAAGATGGTCTTTCTATTCATGAGATTGCTGTATGTCGAACTAGTCTGTTACTAATAAAGATATTTGCCTCACTTGTTTCATGGTATAACTTCATGGGATTGTTGTATGTCATGAATCTGTTATCGGCTCCTATAAAAGAACAAACTGTTGCTGAATATTTGCTGGAAGCTGCTCAAGAAGGATTACCTTTTGATTGGTCTAGATTCAGTGAGATGATAGGACTGACACAAGAGATCATAACAGAAATTCAGGGTGCTATTTCAAAAGTTGGATCTACAGATAAGCTGAAGCCTATTAAAAATGAATTGCCAGAAGATATAAGTTATCAGCACATCAAGACTTATTTGTCACTGCGAAACTGTGGAATTTCCTACGAAGCAATTCAATCTGGAAGTCACCATACTGAGAAAGATGATGAACCTGCGCATAATGCTTCAAATTTTTCAGATCCTACTTTAGAAACATGCCACGTGGAAAGGCATTGTGAAAATGACTTTTCTGTCAACAGTTCAATGGAAAAACGCAACTTAGAAATTGATGAAGTACCTACTCTACCTGTCAATGGTTCTGAGGTACAGAATGTTTCATTGGCCGGTGAGGGGGGATTCACAAACAAACGACAAAAGGTCAGTGAAACGAATGAAGTAAATTCAACTAAATTGAAGGCTACAGAGAGTTCTGTTGTAGAGTGGTTGAAGAATTTTGATGAAGGGGCTACATTGAGCGATGTTTTGGAGCACTTCAACGGATCCAGTGAAGATTCCTTGATTGAACTGCTAAATTGCCTTGAGTGTGACTTTTCAATATATAGGAAGGGTAACATGTACAGGGCTATGTAAAAAAGTTTATGTATCGGGTTTTTATGGATTACGCCTAAAATCCTGTGTGTTTCAATGGTTTATTGCATTTTAACGAAGATGTTAG 3012 0.3994 MDTLPSVLKKYFGFSDFRPYQREVIEKIIEKRDSLVVMATGSGKSLCYQVPPLVVKKTGIVVSPLISLMQDQVMALKERGIKAEYLGSAQKDFTVHSKAERGQFDILFMTPEKACSIPSSFWSNLLKAGISLFAVDEAHCISEWGHDFRVEYKLLDKLREVLLDVPFVGLTATATEKVRFDIINSLKMNNPYVTVGSFDRTNLFYGVKLLNRGQSFIDELVQETSNEVTSGGSTIIYCTTIKDVEQIFKSFVEAGIETGMYHGQMNVKAREESHRLFVSDELQVMVATIAFGMGIDKPNIRQVIHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRSDFAKGDFYCGDVKSVRASRSYPVLCLTSESPMYQEKQRKAVMESLLAAEHYCVLTTCRRKFLLEYFGEKFSADRCGNCDNCKGSKKERDMSREAFLLMACIHSCGGRWGLNMPIDVLRGSRAKKILDSQFDQLPLHGHGKNYPANWWKALGHQLISQGYLKEFVSDIYRTISVGSKGEQFLASSTPDYQPPLVLTLTAEMVGEENGNTQEEFKTLSTSESEGFSEAEGQLYQMLLKERLKLARSVGTAPYAVCGDQAIKQIALTRPSTKARLANIDGVNQHLVTKYGDHFLQAIQKLSQGLNLTLDGEPRIATASLQTKEVRKVSPATNTRKLTSAKFEAWKMWHEDGLSIHEIAVCRTSLLLIKIFASLVSWYNFMGLLYVMNLLSAPIKEQTVAEYLLEAAQEGLPFDWSRFSEMIGLTQEIITEIQGAISKVGSTDKLKPIKNELPEDISYQHIKTYLSLRNCGISYEAIQSGSHHTEKDDEPAHNASNFSDPTLETCHVERHCENDFSVNSSMEKRNLEIDEVPTLPVNGSEVQNVSLAGEGGFTNKRQKVSETNEVNSTKLKATESSVVEWLKNFDEGATLSDVLEHFNGSSEDSLIELLNCLECDFSIYRKGNMYRAM 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g01863 962 Pfam Helicase conserved C-terminal domain 222 325 IPR001650 -
Pste7g01863 962 CDD DEXHc_RecQ 6 199 - -
Pste7g01863 962 Pfam RQC domain 424 520 IPR018982 GO:0006260|GO:0006281|GO:0043138
Pste7g01863 962 FunFam ATP-dependent DNA helicase 558 647 - -
Pste7g01863 962 Pfam RecQ zinc-binding 371 420 IPR032284 -
Pste7g01863 962 SMART RQC_2 427 531 IPR018982 GO:0006260|GO:0006281|GO:0043138
Pste7g01863 962 FunFam ATP-dependent DNA helicase 200 421 - -
Pste7g01863 962 FunFam ATP-dependent DNA helicase 1 198 - -
Pste7g01863 962 Pfam DEAD/DEAH box helicase 19 178 IPR011545 GO:0003676|GO:0005524
Pste7g01863 962 Gene3D - 422 546 IPR036388 -
Pste7g01863 962 SMART hrdc7 562 642 IPR002121 GO:0003676
Pste7g01863 962 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 25 192 IPR014001 -
Pste7g01863 962 SUPERFAMILY HRDC-like 561 637 IPR010997 GO:0000166|GO:0044237
Pste7g01863 962 ProSiteProfiles HRDC domain profile. 562 642 IPR002121 GO:0003676
Pste7g01863 962 Gene3D HRDC domain 558 638 IPR044876 -
Pste7g01863 962 Gene3D - 1 198 IPR027417 -
Pste7g01863 962 NCBIfam RecQ family ATP-dependent DNA helicase 6 478 IPR004589 GO:0004386|GO:0006310
Pste7g01863 962 SMART ultradead3 13 208 IPR014001 -
Pste7g01863 962 SUPERFAMILY "Winged helix" DNA-binding domain 418 524 IPR036390 -
Pste7g01863 962 Gene3D - 200 421 IPR027417 -
Pste7g01863 962 SMART helicmild6 245 326 IPR001650 -
Pste7g01863 962 Pfam HRDC domain 567 632 IPR002121 GO:0003676
Pste7g01863 962 FunFam ATP-dependent DNA helicase 422 546 - -
Pste7g01863 962 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 340 IPR027417 -
Pste7g01863 962 Pfam Helix-turn-helix domain 727 799 IPR029491 -
Pste7g01863 962 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 216 376 IPR001650 -
Pste7g01863 962 PANTHER DNA HELICASE RECQ FAMILY MEMBER 4 689 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g01863 Pste-Chr7 17104877 17116152 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g01863 235 359 Eukaryotic Initiation Factors Gene Family AT3G19760 28.000 6.99e-07 50.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste7g01863 7 17104877 17116152 Pste7g01863 7 17104877 17116152 ECH