Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g01853 ATGCCTGACATGTTTTCCTTATGTGTATTCTGTTTCTACCACTTTGTGGAATGGCTGGTGTTCAGGTCAAGGTCACGAAGTCATGGAAGATCTGAGCCTTCAAATCCTGGTGACACACTTTATGTAACTGGTCTATCGTCAAGGGTCACTGAAAGAGACCTAGAGGAGCATTTTTCCAAGGAAGGAAAGGTTTCTTCCTGTTTTCTTGTGGTGGAGCCCCGCACACGGATTTCTCGTGGTTTTGCTTTTGTTACTATGCAAACTGTTGACGATGCTGAACGCTGTATCAAGTATCTCAATCAATCAGTTTTAGAGGGTCGCTACATTACTGTTGAGCGGTCACGAAGAAAACGTGCTAGAACTCCAACCCCTGGGCACTATCTTGGACTGAAAAATACTAGAGACTATGGCTATCGTGGTGACAGGGGAAGGTATCGTGATGGTCCTGACCGTGACAGGTATCGTGATGGTCCTGACCGTGAAGATTATTCACGGCGTAGGTCTCCAAGGCGCTCACCATTCAGAGGTAGCCAAGATTATTCCCCCCGGCGCTCACCCCATGGAGGAAGGTCCAGGAGAGATAGGTCTAGGTCGCTTCCCTATTCTCCACATGGTAGCCCAGATAGGAAGTATGCTCGTGGATCTAGGTGACGTTTATTTTAGCATGTTACTATATACGTGAACAGGGGAAGGAAAAATTTGGTGACTATTATGGTGCTGTGCCTATCTGTTTGTGCCTATATACGATGCATACGTTTATTGGTGGAAGCTGATGTTCGTATGTGACTATCAGTGTGCCTTTAAGTCCACACAAGTTAGAGTGAACTAAAGTGTGAAATTTCAAGCATTTGTTGTAGGGATTTGAGACTTTTTTCAAAGAATTTCTGTAACCTTTTTTTCACCCGAACCATAATTTTAATCTGAACTGTTACATTTGGGTCCAAAGAGGGGCAATTTCTCTGCACTCCCGGAATTTCTCTTGCACTCCATCCTGAAAGTAAACTTTTGCTACGGCTTGGCCATTCCGGAGGGTGTAGAGACAAATTGTCCTACAGTGACAGCAGTGTCATATGTTACCATTGAGGACATATTATCTGCTGGTGAATTAAGTGTTGGAAAATGCTATCATTCCCCCGACTTGCCCTTTAATCGATGTAATTTACATATTACATTGATTCTTGAAAGAATGTTCTGTCAATCATTCATCGATTCTTGAA 1217 0.4355 MPDMFSLCVFCFYHFVEWLVFRSRSRSHGRSEPSNPGDTLYVTGLSSRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMQTVDDAERCIKYLNQSVLEGRYITVERSRRKRARTPTPGHYLGLKNTRDYGYRGDRGRYRDGPDRDRYRDGPDREDYSRRRSPRRSPFRGSQDYSPRRSPHGGRSRRDRSRSLPYSPHGSPDRKYARGSR 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g01853 216 MobiDBLite consensus disorder prediction 135 173 - -
Pste7g01853 216 SMART rrm1_1 39 112 IPR000504 GO:0003723
Pste7g01853 216 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 109 IPR000504 GO:0003723
Pste7g01853 216 Gene3D - 21 122 IPR012677 -
Pste7g01853 216 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 32 209 - -
Pste7g01853 216 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
Pste7g01853 216 MobiDBLite consensus disorder prediction 114 216 - -
Pste7g01853 216 CDD RRM_SF 40 112 - -
Pste7g01853 216 SUPERFAMILY RNA-binding domain, RBD 31 147 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g01853 Pste-Chr7 17044444 17046717 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g01853 17 120 Eukaryotic Initiation Factors Gene Family AT1G49760 29.060 5.52e-09 53.5