Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g01785 GGACTATTAGTGGGATGATCTTAGTTGGATCATCAATTGGTACTAAGCACGGTCGTAATCCTGGTTTGATTAAGAAACTTTATGAAATTAGCGTCCTTTGTGGGATTGAAGCATGTGCTATAATCTATACTCCAAATGATTCTCAGCTAGAGGTTTGGCCATCTGACCTTGGAGTCCAAAATGTGGTTTCTAGGTTTAGGAGAATTCCTGAACTGCAAAATAGCAAAATGATGTTTGATCAAGAAAAATTCTTGAGGCAAAGTATCATCAAAGCCGAAGAAAAGCTGAACAAACAACAGAATGAAAACAGGAAGGAAGAGATGACCCATCTTATGTTTCAATGCCTAACTACTGGGAGGATTTTTAACAATCCTAAGTTGATTGATTTGAATGATCTGTCATGGTTGATTGATCAAGACCTAAACAAAATAGAAAGAAGTTTGATCAAGAAGGTTTCTGAAATCACCATCCTTTGTGGGATTGAAGCATGTGCTATCGTTAACAATCCAGATGTACCTGAGGCTAAGCCTGATGTTTGGCCATCTAATCAAGGAGTTCAAACTGTGATTTCCAAACTTAGGGGAGTGTCTGAACTGGAGCAAGGCAAGAAAATGTTGTGTCAAGAGAGCTTTCTGAGACAGACACTCATCAAATCAAAAGAACAGCTGAATAAAATGAAGAAAGAAACCAAGAAAAAAGAGATGTCCCATCTCCTATGTCAATACTTCACTGTTGGGAACAAACTTGGGAATGCCAACATCATTGATCTGAATGATATCACATTCTTGACTGATCAAAACTTCGTGGAAATTAGAAACAAAGTCGAAATGCGCCAAGCCCAAGAGGTGAAGGAGAGGAAACGCTTC 866 0.3868 MILVGSSIGTKHGRNPGLIKKLYEISVLCGIEACAIIYTPNDSQLEVWPSDLGVQNVVSRFRRIPELQNSKMMFDQEKFLRQSIIKAEEKLNKQQNENRKEEMTHLMFQCLTTGRIFNNPKLIDLNDLSWLIDQDLNKIERSLIKKVSEITILCGIEACAIVNNPDVPEAKPDVWPSNQGVQTVISKLRGVSELEQGKKMLCQESFLRQTLIKSKEQLNKMKKETKKKEMSHLLCQYFTVGNKLGNANIIDLNDITFLTDQNFVEIRNKVEMRQAQEVKERKRF 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g01785 284 PANTHER MADS BOX PROTEIN 14 112 - -
Pste7g01785 284 FunFam Agamous-like MADS-box protein AGL80 132 215 - -
Pste7g01785 284 SUPERFAMILY SRF-like 140 211 IPR036879 GO:0003677|GO:0046983
Pste7g01785 284 Coils Coil 208 228 - -
Pste7g01785 284 CDD MADS_SRF_like 14 71 IPR033897 GO:0000981|GO:0000987|GO:0045944
Pste7g01785 284 FunFam Agamous-like MADS-box protein AGL80 9 88 - -
Pste7g01785 284 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 14 42 IPR002100 GO:0003677|GO:0046983
Pste7g01785 284 SUPERFAMILY SRF-like 14 84 IPR036879 GO:0003677|GO:0046983
Pste7g01785 284 Coils Coil 77 104 - -
Pste7g01785 284 ProSiteProfiles MADS-box domain profile. 14 51 IPR002100 GO:0003677|GO:0046983
Pste7g01785 284 Gene3D - 11 109 IPR036879 GO:0003677|GO:0046983
Pste7g01785 284 Gene3D - 137 236 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g01785 Pste-Chr7 16499203 16510371 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g01785 147 272 Type I MADS-box Gene Family AT5G48670 38.095 1.34e-27 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pste7g01785 SRF-TF 4.7e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste7g01785 7 16499203 16510371 Pste7g01785 7 16499203 16510371 ECH