Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g01782 TCATGACTAGGAAGAAGGTCAACCTTGAATACATAACCAGCGACTTGAAGAGGAAGGCAACGTTCAGGAAAAGGAAAAAAGGTTTGATAAAAAAAATTTCTGAAATCACCACCCTTTGTGGGATTGAAGCATGTGCTATCATTGACAGTCAGGATGAACCTGAGGCTGAACCTGAGGTTTGGCCATCTGAAGAGGGAGTCGAAAGTGTGATTTCCAAATTTAGGGGAGTGTCTGAACTGGAGCAAGGCAAGAAAATGTTTTGTCAGGAAAGCTTTCTGAGGCAGACAATCATCAAAACAAAAGACCAGCTGAAGAAAGTGACAAAAGAAAACAGAAAAAAAGAGATGTCTCAACTCATATGTCAATACTTCAATTTTGGATACAACCTTGAGAATGCTGACTTGATTGATCTGAAAGATATCGCATTCTTGACTGATCATAACTTGCTGCAAATTAGAAAAGAACTTGAAATGCGCCAAGCCCAAGAGGTGACACCAGTTATTGTAAACGAAGGAGAAACCATGAATGAAGGAAATGAAGCACTTGTGAATCATGCCCAAGAAACTGAGAGCAATGCGGATGCCATGCAAACTCCAAATAGATCTGCGGCGGACAACAACATCAATGGTGGTGATGATGAGGATGTGATGTTAACATTGGAAGATGTTAATGTTCATAGTGGTTTGCTGAAGAAGGTTGCTGAAATCACGATCCTTTGTGGGATAGAAGCATGTGCTATAATTTTTAGTCGAGATGAATCGGAGGATGAGCCTGAGGTATGGCCATCTGAAGAGGGAGTCCAAAGAATGATTTCCAAATTTAGGGGAGTGTCTGAACTGGAGCAAGGCAAGAAAATGTTGTGTCAAGCTAGCTTTCTGAGGCAGGCAATCTTCAAAACAAAAGAGAAGCTGAAGAAAGTGATGAAAGAAAATAGGAAAAAAGAGATGCACCTTCTCATGTGTCAATACTTCACTGTTGCCAACAACCTTGAGAATGCCAACTTGATTGATCTCAAAGATATCACATACTTGACTGATCAAAACTTGGAGGATATTAGAAAGGAAATCAATAAGCGTGACCAAGCCCAAAAGGTGACAGTGACACCAGTTACTGAAAACGAGGGAGAAATCATGACTGAAGAAGGAGAGGAAGCACTTGTCAATTATGTCAAAGGAACTGACACCAATGCCATGCAAAATTGGAATCAGGCTGTGGACAACGATGGTAAGGATGACATGTTGACATTGGACGATGTTAATGTTCCTAGTGGTTGGCTTAACCAGTATATCCGT 1292 0.4087 MTRKKVNLEYITSDLKRKATFRKRKKGLIKKISEITTLCGIEACAIIDSQDEPEAEPEVWPSEEGVESVISKFRGVSELEQGKKMFCQESFLRQTIIKTKDQLKKVTKENRKKEMSQLICQYFNFGYNLENADLIDLKDIAFLTDHNLLQIRKELEMRQAQEVTPVIVNEGETMNEGNEALVNHAQETESNADAMQTPNRSAADNNINGGDDEDVMLTLEDVNVHSGLLKKVAEITILCGIEACAIIFSRDESEDEPEVWPSEEGVQRMISKFRGVSELEQGKKMLCQASFLRQAIFKTKEKLKKVMKENRKKEMHLLMCQYFTVANNLENANLIDLKDITYLTDQNLEDIRKEINKRDQAQKVTVTPVTENEGEIMTEEGEEALVNYVKGTDTNAMQNWNQAVDNDGKDDMLTLDDVNVPSGWLNQYIR 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g01782 430 FunFam Agamous-like MADS-box protein AGL80 222 300 - -
Pste7g01782 430 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pste7g01782 430 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pste7g01782 430 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Pste7g01782 430 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Pste7g01782 430 PANTHER MADS BOX PROTEIN 3 155 - -
Pste7g01782 430 SUPERFAMILY SRF-like 226 295 IPR036879 GO:0003677|GO:0046983
Pste7g01782 430 Gene3D - 14 121 IPR036879 GO:0003677|GO:0046983
Pste7g01782 430 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Pste7g01782 430 SMART madsneu2 150 262 IPR002100 GO:0003677|GO:0046983
Pste7g01782 430 Gene3D - 225 295 IPR036879 GO:0003677|GO:0046983
Pste7g01782 430 CDD MADS_SRF_like 226 285 IPR033897 GO:0000981|GO:0000987|GO:0045944
Pste7g01782 430 FunFam Agamous-like MADS-box protein AGL80 13 100 - -
Pste7g01782 430 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Pste7g01782 430 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 226 251 IPR002100 GO:0003677|GO:0046983
Pste7g01782 430 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g01782 Pste-Chr7 16471439 16483445 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g01782 232 376 Type I MADS-box Gene Family AT5G48670 38.926 8.60e-27 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pste7g01782 SRF-TF 3.5e-13 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste7g01782 7 16471439 16483445 Pste7g01782 7 16471439 16483445 ECH