Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g01707 GGTTTGTTGGTTCTCGAAATCGAAGCGGTTCCATGGCGGAAGAGCGATTCACGGGCGTGGTTCAGTGGTTCAACAATGGCAAGGGCTTTGGCTTCATTAAGCCCGATGACGGCGGCGAGGATCTCTTCGTCCACCAGTCCTCCATCAGATCCGACGGTTACCGCACTCTCCTCGAGGGCGATCGCGTCGAGTTCGCCATCGCCACCGGCGACAACGACAAGACCAAGGCCGTCGACGTTACCGGCCTCGACGGCGCCCCTCTCCAGCCCCGCTCCGCCACTGTAAACCGTGGCGGAGGCGGTTTCGGCTTTGGCTCCCGCCGCAACGGCAGCGGAGCCGGCGGAGGCGCCGCGTGCTACCAGTGCGGCGAGTTCGGCCACCTCGCTAGGGATTGCACCCGCAGCAGCAACTCCGGCGGCGGCGGTGGCGGTTGTTTCGTCTGCGGCGGGTTTGGTCATCTCGCGAGAGACTGCGGCCGCGGCGGTGGCGGCAATAGTGGTGGCGGAGGAGGTGGATCTTGCTTTAGATGCGGCGGGTTCGGCCACATGGCAAGGGACTGCGCCACCGCGAAGAGTGGCGGAGGCGGTGGCGGTGGGAGTGGTGGAGGTTGTTTTCGGTGTGGGGAGGTTGGTCATATGGCTAGGGATTGCGGCATTGAAGGAGGGAGGTTTGGCGGTGGTAACAGTGGCGGCGGCGGCGGCGGCGGCGGTAGTCTTGGAAAGAGCACGTGCTTTAATTGTGGGAAGCCAGGGCATTTTGCGAGGGAGTGCGTTGAGGCTTCTGGTGCTTCGCAGGCGATTTTGCCTTATCCTTTTGTTAGTTGGTACTGCCTCCTGTTAGACCTTGTTTCTGGA 854 0.6276 MAEERFTGVVQWFNNGKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDRVEFAIATGDNDKTKAVDVTGLDGAPLQPRSATVNRGGGGFGFGSRRNGSGAGGGAACYQCGEFGHLARDCTRSSNSGGGGGGCFVCGGFGHLARDCGRGGGGNSGGGGGGSCFRCGGFGHMARDCATAKSGGGGGGGSGGGCFRCGEVGHMARDCGIEGGRFGGGNSGGGGGGGGSLGKSTCFNCGKPGHFARECVEASGASQAILPYPFVSWYCLLLDLVSG 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g01707 274 ProSiteProfiles Zinc finger CCHC-type profile. 163 176 IPR001878 GO:0003676|GO:0008270
Pste7g01707 274 PRINTS Eggshell protein signature 215 233 - -
Pste7g01707 274 PRINTS Eggshell protein signature 182 192 - -
Pste7g01707 274 PRINTS Eggshell protein signature 156 171 - -
Pste7g01707 274 PRINTS Eggshell protein signature 94 105 - -
Pste7g01707 274 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Pste7g01707 274 SMART c2hcfinal6 162 178 IPR001878 GO:0003676|GO:0008270
Pste7g01707 274 SMART c2hcfinal6 192 208 IPR001878 GO:0003676|GO:0008270
Pste7g01707 274 SMART c2hcfinal6 232 248 IPR001878 GO:0003676|GO:0008270
Pste7g01707 274 SMART c2hcfinal6 107 123 IPR001878 GO:0003676|GO:0008270
Pste7g01707 274 SMART c2hcfinal6 133 149 IPR001878 GO:0003676|GO:0008270
Pste7g01707 274 ProSiteProfiles Zinc finger CCHC-type profile. 108 123 IPR001878 GO:0003676|GO:0008270
Pste7g01707 274 SUPERFAMILY Retrovirus zinc finger-like domains 97 149 IPR036875 GO:0003676|GO:0008270
Pste7g01707 274 ProSiteProfiles Zinc finger CCHC-type profile. 134 147 IPR001878 GO:0003676|GO:0008270
Pste7g01707 274 PANTHER COLD SHOCK DOMAIN PROTEIN 2 181 248 - -
Pste7g01707 274 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Pste7g01707 274 SUPERFAMILY Nucleic acid-binding proteins 4 74 IPR012340 -
Pste7g01707 274 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Pste7g01707 274 Gene3D - 223 258 - -
Pste7g01707 274 Gene3D - 158 185 - -
Pste7g01707 274 Gene3D - 188 212 - -
Pste7g01707 274 ProSiteProfiles Zinc finger CCHC-type profile. 193 206 IPR001878 GO:0003676|GO:0008270
Pste7g01707 274 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Pste7g01707 274 SMART csp_8 7 72 IPR011129 GO:0003676
Pste7g01707 274 Pfam Zinc knuckle 192 206 IPR001878 GO:0003676|GO:0008270
Pste7g01707 274 Pfam Zinc knuckle 162 177 IPR001878 GO:0003676|GO:0008270
Pste7g01707 274 Pfam Zinc knuckle 232 246 IPR001878 GO:0003676|GO:0008270
Pste7g01707 274 Pfam Zinc knuckle 133 147 IPR001878 GO:0003676|GO:0008270
Pste7g01707 274 Pfam Zinc knuckle 107 122 IPR001878 GO:0003676|GO:0008270
Pste7g01707 274 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Pste7g01707 274 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Pste7g01707 274 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Pste7g01707 274 SUPERFAMILY Retrovirus zinc finger-like domains 213 250 IPR036875 GO:0003676|GO:0008270
Pste7g01707 274 SUPERFAMILY Retrovirus zinc finger-like domains 154 207 IPR036875 GO:0003676|GO:0008270
Pste7g01707 274 Gene3D - 105 157 - -
Pste7g01707 274 Gene3D - 1 82 IPR012340 -
Pste7g01707 274 ProSiteProfiles Zinc finger CCHC-type profile. 233 246 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g01707 Pste-Chr7 15851160 15852198 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Pste7g01707 CSD 1.6e-24 CL0021