LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste7g01683	GCATTTTGTGTCGGTGGCGCGAAGTTTTCATATAATGGAAGAACCGTGGAGATTCATCACTTGGTTGAAGGTCTTCCGTGTGTTCGTGGCGCTGGTGTCTCTATTTTCGCTCACCATGGAACCTATTTCTTGTTCTACTCTCAACAACGAAGGGTTGGCTCTAGAAAGGATGAGAGATATGGTGGTGAGGGATCCATTGGATGCTTTATCAAGTTGGAATAGCAAAGAAGGAGAGGTTGATGTTGATCCATGCTCTTGGTTCGGAGTAGAGTGCTCCAAAGGCAATGTTGTATCCTTGAATTTGAAAGATCTATGTCTTCACGGAACACTAGCACCCGAAATTGGGAAGCTGGTTCACATAAAATCAATTATTTTACGCAACAATTATTTCCACGGATACATCCCTAAGGAGATACTACAATTAGAGGAGCTAGAAGTTCTTGACTTAGGATATAACAACTTTAGTGGACAATTTCCATCTGAAGACTATGGCAGCAATCCATCGCTGACTACACTTTTATTGGACAACAATGACCATCTTGCCTACTTAACTCCAGAATTGTATAAGCTCACGACAGTCTCTGAATTGCAAGTACATGAAGAACAACTAACTGCAGATGGTGTTAAGAGGGGTGATGATGACAAGGAAACTCTTTCACCATCAACATCAACTTTTCCTTCTACACAATCACCAGTTTCTGAGCCTTTCTCACCATCACCATTAGAGAGTCCCTCAGATTCACCTACATCTTCAGAACTTTCCCCTTCACCATCTCCATCTCTATCCAGTTTCTTTTTCACTCTTTCACCCTCACCTTCACCTGCGGTAGCACCGACTCCAGCAAATCCACCTATGGTTCTATCCACACATCCACAATCAAATTGGGTTTCAACGCCTTCTGCTGCTTCTTCTTCAAACCAATGGAATGCAAACAGTTCAAACTCAAAGCAAATTACTGTGATTATTTGGACTACAGTTGGGGGCTTCTCCTTCCTCATTTTGGTGTCAGCTATTGTTTTTGTTTGCTTTAGAAGTACCAAGGTTGTAACAGTAAAACCTTGGGCCACAGGGTTGAGTGGCCAACTGCAGAAAGCATTTGTATCAGGTGTTCCAAGTCTGAAACGAACAGAAATTGAAGTAGCTTGTGAAGATTTCAGCAACATTATTGGTTCACTGCCTAATGGGACTGTTTATAAGGGCACTCTTTCCAGTGGAGTTGAGATAGCTGTAGCATCCTCTGCAGTGACTTCATCCCAAAACTGGTCTAAAAATATGGAAACTCAATTCCTAAAGAAGATCGAGATATTGTCAAAAGTGAACCACAAGAATTTTGTGAATCTTATTGGATATTGTGAAGAGAAAAAGCCATTCACGAGGATGATGGTGTTTGAGTATGCTCCAAATGGAACGCTGTTTGAGCATCTACACGTTAGAGAAGCAGAACAACTAGATTGGGGAATGAGAAAGAGGATAGCTATGGGAATAGCCTACAGTCTGGAGCACTTGCATAAAATGACACCACCTGTTGCCTACAGAAACATTCTATCTTCCTCGGTATACTTGACTGAAGACTATGCTGCTAAATTATCAGACCTTAGTTTCTGGACTGATATAGTCTCTGCAAAGAAGGATTCCGAAGCCACACAACTCGTAGAAGCAACTTCAGCATATATAAAGGCCAATGTTTACAGCTTTGGAGTACTATTGTTTGAGTTGATTACTGGAAGAATTCCCTTTGCAGTGGAGAATGGCTTATATGAAGATTGGGCAGCAGAATTTATAAAGGGGCAATCCTTGAAAGACGTAGTGGATAAAAGCCTGAACTCTTTGCAAGCAAATGAAATTGAAAAATGGGAAGAAGTGATTAGCAGCTGTGTACATCCAGATCCAGAAAAAAGGCCAACTATGAAAGAGATTACTGCTAAGATGAAGGAAATTACTGCCATGGGGCCTGATGGAGCAACTCCAAAAGCATCTCCTCTTTGGTGGGCAGAAATAGAAATTATGTCCACTGACTTAAGTTCAGAT	2029	0.4145	MEEPWRFITWLKVFRVFVALVSLFSLTMEPISCSTLNNEGLALERMRDMVVRDPLDALSSWNSKEGEVDVDPCSWFGVECSKGNVVSLNLKDLCLHGTLAPEIGKLVHIKSIILRNNYFHGYIPKEILQLEELEVLDLGYNNFSGQFPSEDYGSNPSLTTLLLDNNDHLAYLTPELYKLTTVSELQVHEEQLTADGVKRGDDDKETLSPSTSTFPSTQSPVSEPFSPSPLESPSDSPTSSELSPSPSPSLSSFFFTLSPSPSPAVAPTPANPPMVLSTHPQSNWVSTPSAASSSNQWNANSSNSKQITVIIWTTVGGFSFLILVSAIVFVCFRSTKVVTVKPWATGLSGQLQKAFVSGVPSLKRTEIEVACEDFSNIIGSLPNGTVYKGTLSSGVEIAVASSAVTSSQNWSKNMETQFLKKIEILSKVNHKNFVNLIGYCEEKKPFTRMMVFEYAPNGTLFEHLHVREAEQLDWGMRKRIAMGIAYSLEHLHKMTPPVAYRNILSSSVYLTEDYAAKLSDLSFWTDIVSAKKDSEATQLVEATSAYIKANVYSFGVLLFELITGRIPFAVENGLYEDWAAEFIKGQSLKDVVDKSLNSLQANEIEKWEEVISSCVHPDPEKRPTMKEITAKMKEITAMGPDGATPKASPLWWAEIEIMSTDLSSD	665

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste7g01683	665	Pfam	Leucine rich repeat N-terminal domain	37	81	IPR013210	-
	Pste7g01683	665	FunFam	Inactive receptor-like serine/threonine-protein kinase	346	454	-	-
	Pste7g01683	665	Gene3D	Phosphorylase Kinase; domain 1	348	454	-	-
	Pste7g01683	665	PANTHER	PROTEIN MALE DISCOVERER 2	18	660	-	-
	Pste7g01683	665	FunFam	Leucine-rich repeat receptor-like kinase	43	170	-	-
	Pste7g01683	665	SUPERFAMILY	L domain-like	44	193	-	-
	Pste7g01683	665	MobiDBLite	consensus disorder prediction	207	225	-	-
	Pste7g01683	665	MobiDBLite	consensus disorder prediction	192	206	-	-
	Pste7g01683	665	MobiDBLite	consensus disorder prediction	275	298	-	-
	Pste7g01683	665	SUPERFAMILY	Protein kinase-like (PK-like)	355	630	IPR011009	-
	Pste7g01683	665	MobiDBLite	consensus disorder prediction	192	245	-	-
	Pste7g01683	665	Gene3D	Ribonuclease Inhibitor	35	205	IPR032675	-
	Pste7g01683	665	MobiDBLite	consensus disorder prediction	264	298	-	-
	Pste7g01683	665	Gene3D	Transferase(Phosphotransferase) domain 1	455	641	-	-
	Pste7g01683	665	ProSiteProfiles	Protein kinase domain profile.	372	635	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste7g01683	665	Pfam	Protein tyrosine and serine/threonine kinase	375	631	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste7g01683	Pste-Chr7	15639399	15647098	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste7g01683	7	633	Receptor kinase-like Gene Family	AT5G16000	24.585	2.16e-45	169

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-VI-2	Pste7g01683		PK_Tyr_Ser-Thr	4e-29	CL0016